Variant report

Variant	rs7196244
Chromosome Location	chr16:47577668-47577669
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 254 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:241)

rs_ID	r²[population]
rs1011532	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10521162	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10521163	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11860257	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11860828	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11861008	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11862096	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11862281	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11862517	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11863178	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11865790	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1200967	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13330181	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13330337	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13330510	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13330699	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13330832	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13331418	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13331748	0.92[EUR][1000 genomes]
rs13332032	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13332058	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13332953	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13333003	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13334239	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13334342	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13334408	0.92[EUR][1000 genomes]
rs13335171	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13335407	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13336943	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13337972	0.92[EUR][1000 genomes]
rs13338489	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13339357	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13339406	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1486419	0.92[EUR][1000 genomes]
rs1541589	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16942513	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945353	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16945354	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16945357	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945358	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945372	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945379	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945382	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945386	1.00[ASN][1000 genomes]
rs16945387	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16945401	1.00[ASN][1000 genomes]
rs16945408	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945413	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945430	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945438	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945443	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945460	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945474	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945493	1.00[ASN][1000 genomes]
rs16945509	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945543	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945553	0.89[EUR][1000 genomes]
rs16945557	0.92[EUR][1000 genomes]
rs16945594	0.92[EUR][1000 genomes]
rs16945617	0.92[EUR][1000 genomes]
rs16945621	0.92[EUR][1000 genomes]
rs16945624	0.92[EUR][1000 genomes]
rs16945629	0.92[EUR][1000 genomes]
rs16945641	0.92[EUR][1000 genomes]
rs16945644	0.92[EUR][1000 genomes]
rs16945648	0.92[EUR][1000 genomes]
rs16945650	0.92[EUR][1000 genomes]
rs16945652	0.92[EUR][1000 genomes]
rs16955095	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16955781	1.00[EUR][1000 genomes]
rs16956024	1.00[EUR][1000 genomes]
rs16956031	1.00[EUR][1000 genomes]
rs16956083	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16956093	1.00[EUR][1000 genomes]
rs1901903	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1973217	0.83[AMR][1000 genomes]
rs2046531	0.92[EUR][1000 genomes]
rs2054000	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2101373	0.92[EUR][1000 genomes]
rs2111226	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2341961	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28385551	0.92[EUR][1000 genomes]
rs28448361	0.92[EUR][1000 genomes]
rs28450418	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28482463	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28497443	0.92[EUR][1000 genomes]
rs28532949	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28542319	0.92[EUR][1000 genomes]
rs28566542	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28577066	0.92[EUR][1000 genomes]
rs28577929	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28590410	0.92[EUR][1000 genomes]
rs28597108	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28681341	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28688420	0.92[EUR][1000 genomes]
rs2880205	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28844885	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28865322	0.92[EUR][1000 genomes]
rs28898390	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4271615	0.92[EUR][1000 genomes]
rs56268318	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56687111	0.92[EUR][1000 genomes]
rs56819508	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56830681	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57543382	1.00[EUR][1000 genomes]
rs57772915	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57884999	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58190241	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58251914	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58550976	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59453301	1.00[EUR][1000 genomes]
rs59547333	1.00[EUR][1000 genomes]
rs60200500	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61053970	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61078258	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61465994	0.92[EUR][1000 genomes]
rs6598598	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6598602	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6598613	0.92[EUR][1000 genomes]
rs7184358	0.92[EUR][1000 genomes]
rs7185641	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7185753	0.92[EUR][1000 genomes]
rs7185915	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7186864	0.92[EUR][1000 genomes]
rs7186924	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7187134	0.92[EUR][1000 genomes]
rs7187393	0.92[EUR][1000 genomes]
rs7189446	0.92[EUR][1000 genomes]
rs7190399	0.92[EUR][1000 genomes]
rs7192537	1.00[EUR][1000 genomes]
rs7193794	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7194190	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7194249	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7195074	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7197471	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7197586	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7197659	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7197882	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7199392	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7199696	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7199958	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7200041	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7200149	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7200406	0.92[EUR][1000 genomes]
rs7200554	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7201764	0.92[EUR][1000 genomes]
rs7202145	0.92[EUR][1000 genomes]
rs7202457	0.92[EUR][1000 genomes]
rs7202612	0.92[EUR][1000 genomes]
rs7202716	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7203019	0.92[EUR][1000 genomes]
rs7204944	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73534789	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73534794	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73536906	0.92[EUR][1000 genomes]
rs73536913	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73536920	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73536936	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73536939	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73538991	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73538993	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73538997	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73539001	1.00[EUR][1000 genomes]
rs73541004	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73541007	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73541010	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73541086	1.00[EUR][1000 genomes]
rs73541089	1.00[EUR][1000 genomes]
rs73541102	1.00[EUR][1000 genomes]
rs73543108	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73543111	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73543118	1.00[EUR][1000 genomes]
rs73544253	0.92[EUR][1000 genomes]
rs73544267	0.92[EUR][1000 genomes]
rs73544271	0.92[EUR][1000 genomes]
rs73544281	0.92[EUR][1000 genomes]
rs73544284	0.92[EUR][1000 genomes]
rs73546131	0.92[EUR][1000 genomes]
rs73546132	0.92[EUR][1000 genomes]
rs73546138	0.92[EUR][1000 genomes]
rs73546141	0.92[EUR][1000 genomes]
rs73546143	0.92[EUR][1000 genomes]
rs73547271	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73547284	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73547290	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73547296	1.00[ASN][1000 genomes]
rs73549309	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73549315	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73549319	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73549387	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551204	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551214	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551221	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551224	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551228	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551230	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551233	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551238	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7498593	1.00[EUR][1000 genomes]
rs7499413	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8044496	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8046175	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8046259	0.92[EUR][1000 genomes]
rs8047342	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8048233	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8048279	0.92[EUR][1000 genomes]
rs8049111	0.92[EUR][1000 genomes]
rs8051273	1.00[EUR][1000 genomes]
rs8052294	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8053323	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8054017	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8054582	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8061062	0.92[EUR][1000 genomes]
rs8061556	0.92[EUR][1000 genomes]
rs8061656	0.92[EUR][1000 genomes]
rs8062269	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs876258	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9328592	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9328600	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9746012	0.92[EUR][1000 genomes]
rs9746020	0.92[EUR][1000 genomes]
rs9746028	0.85[EUR][1000 genomes]
rs9921542	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9922381	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9922569	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9923591	0.92[EUR][1000 genomes]
rs9926490	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9927084	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9927829	0.92[EUR][1000 genomes]
rs9929392	0.92[EUR][1000 genomes]
rs9929794	0.92[EUR][1000 genomes]
rs9930026	0.92[EUR][1000 genomes]
rs9931638	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9932128	0.92[EUR][1000 genomes]
rs9932230	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9933052	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9934478	0.89[EUR][1000 genomes]
rs9935427	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9935542	0.92[EUR][1000 genomes]
rs9936361	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9936580	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1795199	chr16:47111119-47732476	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv916572	chr16:47227786-47646103	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv933151	chr16:47236330-47646103	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	esv2757637	chr16:47261512-47595005	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	esv2758644	chr16:47261512-47606287	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
6	esv2758423	chr16:47316866-47606287	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
7	nsv427983	chr16:47316866-47606287	Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
8	esv34317	chr16:47390600-47672479	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
9	nsv572537	chr16:47411203-47599502	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
10	nsv520355	chr16:47424828-48164777	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
11	esv1794084	chr16:47478207-47676184	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
12	nsv1059367	chr16:47524706-47586335	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	esv2761905	chr16:47524718-47586347	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:47539200-47580400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr16:47539400-47599000	Weak transcription	NHEK	skin
3	chr16:47548800-47605000	Weak transcription	Right Ventricle	heart
4	chr16:47549200-47580600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr16:47550600-47580400	Weak transcription	NHDF-Ad	bronchial
6	chr16:47553600-47599000	Weak transcription	NHLF	lung
7	chr16:47554800-47581400	Weak transcription	Fetal Heart	heart
8	chr16:47557400-47583400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr16:47558000-47587400	Weak transcription	A549	lung
10	chr16:47566600-47578400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr16:47566600-47580400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr16:47567200-47579800	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr16:47567200-47580400	Weak transcription	Rectal Smooth Muscle	rectum
14	chr16:47567600-47580400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr16:47567600-47580400	Weak transcription	Ovary	ovary
16	chr16:47567600-47580600	Weak transcription	Stomach Smooth Muscle	stomach
17	chr16:47567800-47580200	Weak transcription	Fetal Thymus	thymus
18	chr16:47567800-47580400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr16:47567800-47580400	Weak transcription	Pancreas	Pancrea
20	chr16:47567800-47580600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr16:47568000-47580400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr16:47568200-47580400	Weak transcription	Aorta	Aorta
23	chr16:47572600-47584000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr16:47572800-47578200	Weak transcription	Primary T cells from cord blood	blood
25	chr16:47572800-47580800	Weak transcription	K562	blood
26	chr16:47572800-47581600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr16:47573200-47580000	Weak transcription	Fetal Intestine Large	intestine
28	chr16:47573400-47580400	Weak transcription	HepG2	liver
29	chr16:47573400-47581400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr16:47573400-47584800	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr16:47574000-47581600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr16:47574000-47584000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr16:47574400-47580200	Weak transcription	Colonic Mucosa	Colon
34	chr16:47574600-47580600	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr16:47574800-47580000	Weak transcription	Primary T helper cells PMA-I stimulated	--
36	chr16:47575000-47580200	Weak transcription	Fetal Stomach	stomach
37	chr16:47575000-47580400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr16:47575200-47578200	Weak transcription	Duodenum Mucosa	Duodenum
39	chr16:47575200-47580000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr16:47575200-47580000	Weak transcription	Left Ventricle	heart
41	chr16:47575200-47580200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr16:47575600-47580400	Weak transcription	Liver	Liver
43	chr16:47576600-47578000	Weak transcription	Primary B cells from peripheral blood	blood
44	chr16:47577200-47588800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr16:47577600-47579000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr16:47577600-47579800	Weak transcription	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links