Variant report

Variant	rs11860828
Chromosome Location	chr16:47729322-47729323
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:47727162..47730087-chr16:47731751..47735128,4	K562	blood:

Extended variants
information (count: 275 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:271)

rs_ID	r²[population]
rs1011532	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[YRI][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10492847	0.84[EUR][1000 genomes]
rs10521162	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10521163	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11860257	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11861008	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11862096	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11862281	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11863178	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1200967	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12102942	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12102967	0.84[AMR][1000 genomes]
rs13330337	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13330510	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13330699	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13331748	1.00[EUR][1000 genomes]
rs13332058	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13332953	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13333199	0.80[AMR][1000 genomes]
rs13334239	0.92[EUR][1000 genomes]
rs13334342	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13334408	1.00[EUR][1000 genomes]
rs13335407	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13336200	1.00[EUR][1000 genomes]
rs13336943	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13337281	1.00[EUR][1000 genomes]
rs13337671	0.80[AMR][1000 genomes]
rs13337810	0.84[EUR][1000 genomes]
rs13337972	1.00[EUR][1000 genomes]
rs13338447	1.00[EUR][1000 genomes]
rs13338489	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13339357	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1486419	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16942513	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945353	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16945354	0.92[EUR][1000 genomes]
rs16945357	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945358	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945372	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945379	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945382	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945386	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16945387	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16945401	1.00[ASN][1000 genomes]
rs16945408	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945413	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945430	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945438	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945443	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945460	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945474	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945493	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16945509	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945543	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945553	0.96[EUR][1000 genomes]
rs16945557	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs16945594	1.00[EUR][1000 genomes]
rs16945617	1.00[EUR][1000 genomes]
rs16945621	1.00[EUR][1000 genomes]
rs16945624	1.00[EUR][1000 genomes]
rs16945629	1.00[EUR][1000 genomes]
rs16945641	1.00[EUR][1000 genomes]
rs16945644	1.00[EUR][1000 genomes]
rs16945648	1.00[EUR][1000 genomes]
rs16945650	1.00[EUR][1000 genomes]
rs16945652	1.00[EUR][1000 genomes]
rs16945661	1.00[EUR][1000 genomes]
rs16945662	1.00[EUR][1000 genomes]
rs16945673	0.84[EUR][1000 genomes]
rs1901903	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1973217	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2046531	1.00[EUR][1000 genomes]
rs2054000	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2101373	1.00[EUR][1000 genomes]
rs2111226	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2341961	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28375672	0.80[AMR][1000 genomes]
rs28385551	1.00[EUR][1000 genomes]
rs28409782	0.80[AMR][1000 genomes]
rs28412153	0.80[AMR][1000 genomes]
rs28418647	0.96[EUR][1000 genomes]
rs28434188	0.96[EUR][1000 genomes]
rs28448361	1.00[EUR][1000 genomes]
rs28454787	0.96[EUR][1000 genomes]
rs28482463	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28496502	0.96[EUR][1000 genomes]
rs28497443	1.00[EUR][1000 genomes]
rs28539472	0.96[EUR][1000 genomes]
rs28542319	1.00[EUR][1000 genomes]
rs28566036	0.84[EUR][1000 genomes]
rs28566542	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28577066	1.00[EUR][1000 genomes]
rs28581476	0.96[EUR][1000 genomes]
rs28590410	1.00[EUR][1000 genomes]
rs28597108	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28606368	0.84[EUR][1000 genomes]
rs28630392	0.96[EUR][1000 genomes]
rs28656465	0.80[AMR][1000 genomes]
rs28679750	0.96[EUR][1000 genomes]
rs28688420	1.00[EUR][1000 genomes]
rs28688663	0.84[EUR][1000 genomes]
rs28690829	0.96[EUR][1000 genomes]
rs28691740	0.84[EUR][1000 genomes]
rs28712810	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28715928	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28754618	1.00[EUR][1000 genomes]
rs2880205	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28844885	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28853924	0.96[EUR][1000 genomes]
rs28854517	0.80[AMR][1000 genomes]
rs28865322	1.00[EUR][1000 genomes]
rs3903067	0.81[EUR][1000 genomes]
rs3950354	0.80[AMR][1000 genomes]
rs4271615	1.00[EUR][1000 genomes]
rs56268318	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56687111	1.00[EUR][1000 genomes]
rs56830681	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57884999	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57930434	1.00[EUR][1000 genomes]
rs58190241	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58550976	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60049376	1.00[EUR][1000 genomes]
rs60200500	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60201061	0.80[AMR][1000 genomes]
rs61053970	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61115457	1.00[EUR][1000 genomes]
rs61465994	1.00[EUR][1000 genomes]
rs6500318	1.00[CEU][hapmap];0.80[AMR][1000 genomes]
rs6598598	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6598602	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6598613	1.00[EUR][1000 genomes]
rs7184358	1.00[EUR][1000 genomes]
rs7185753	1.00[EUR][1000 genomes]
rs7185915	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7186530	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7186864	1.00[EUR][1000 genomes]
rs7186924	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7187134	1.00[EUR][1000 genomes]
rs7187393	1.00[EUR][1000 genomes]
rs7189446	1.00[EUR][1000 genomes]
rs7190399	1.00[EUR][1000 genomes]
rs7192029	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7192537	0.92[EUR][1000 genomes]
rs7193023	0.80[AMR][1000 genomes]
rs7193794	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7194190	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7194249	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7195074	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[YRI][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7196244	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7197471	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7197659	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7197882	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7198023	0.80[AMR][1000 genomes]
rs7199392	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7199696	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7200041	0.92[EUR][1000 genomes]
rs7200406	1.00[EUR][1000 genomes]
rs7200554	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7201764	1.00[EUR][1000 genomes]
rs7202145	1.00[EUR][1000 genomes]
rs7202175	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7202457	1.00[EUR][1000 genomes]
rs7202612	1.00[EUR][1000 genomes]
rs7203019	1.00[EUR][1000 genomes]
rs7204944	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7205263	0.84[AMR][1000 genomes]
rs728884	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73534789	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73534794	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73536704	1.00[EUR][1000 genomes]
rs73536711	1.00[EUR][1000 genomes]
rs73536717	0.96[EUR][1000 genomes]
rs73536721	0.96[EUR][1000 genomes]
rs73536725	0.96[EUR][1000 genomes]
rs73536729	0.84[EUR][1000 genomes]
rs73536749	0.84[EUR][1000 genomes]
rs73536752	0.81[EUR][1000 genomes]
rs73536770	0.80[AMR][1000 genomes]
rs73536906	1.00[EUR][1000 genomes]
rs73536913	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73536920	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73536936	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73536939	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73544253	1.00[EUR][1000 genomes]
rs73544267	1.00[EUR][1000 genomes]
rs73544271	1.00[EUR][1000 genomes]
rs73544281	1.00[EUR][1000 genomes]
rs73544284	1.00[EUR][1000 genomes]
rs73546131	1.00[EUR][1000 genomes]
rs73546132	1.00[EUR][1000 genomes]
rs73546138	1.00[EUR][1000 genomes]
rs73546141	1.00[EUR][1000 genomes]
rs73546143	1.00[EUR][1000 genomes]
rs73547271	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73547284	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73547290	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73547296	1.00[ASN][1000 genomes]
rs73549309	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73549315	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73549319	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73549387	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551204	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551214	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551221	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551224	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551228	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551230	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551233	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551238	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73552163	1.00[EUR][1000 genomes]
rs73552167	1.00[EUR][1000 genomes]
rs7500284	0.80[AMR][1000 genomes]
rs8044496	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8046175	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8046259	1.00[EUR][1000 genomes]
rs8047342	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8048233	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8048279	1.00[EUR][1000 genomes]
rs8049111	1.00[EUR][1000 genomes]
rs8051273	0.92[EUR][1000 genomes]
rs8052294	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8053042	1.00[EUR][1000 genomes]
rs8053678	0.84[AMR][1000 genomes]
rs8054017	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8054264	0.80[AMR][1000 genomes]
rs8054582	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8055624	1.00[EUR][1000 genomes]
rs8055695	1.00[EUR][1000 genomes]
rs8055999	0.80[AMR][1000 genomes]
rs8061062	1.00[EUR][1000 genomes]
rs8061556	1.00[EUR][1000 genomes]
rs8061656	1.00[EUR][1000 genomes]
rs8062269	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8062495	0.88[AMR][1000 genomes]
rs8064036	0.80[AMR][1000 genomes]
rs8064193	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs876258	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9328592	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9328600	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9746012	1.00[EUR][1000 genomes]
rs9746020	1.00[EUR][1000 genomes]
rs9746028	0.92[EUR][1000 genomes]
rs9921542	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9922381	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9922569	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9923591	1.00[EUR][1000 genomes]
rs9924916	0.80[AMR][1000 genomes]
rs9926490	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9926971	1.00[EUR][1000 genomes]
rs9927096	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9927438	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9927829	1.00[EUR][1000 genomes]
rs9929392	1.00[EUR][1000 genomes]
rs9929794	1.00[EUR][1000 genomes]
rs9930026	1.00[EUR][1000 genomes]
rs9931638	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9931666	0.81[AMR][1000 genomes]
rs9932128	1.00[EUR][1000 genomes]
rs9932230	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9933052	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9934384	0.80[AMR][1000 genomes]
rs9934478	0.96[EUR][1000 genomes]
rs9934668	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9935427	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9935542	1.00[EUR][1000 genomes]
rs9936361	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9936434	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs9936580	1.00[EUR][1000 genomes]
rs9938516	0.80[AMR][1000 genomes]
rs9940448	0.80[AMR][1000 genomes]
rs9940610	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1795199	chr16:47111119-47732476	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv520355	chr16:47424828-48164777	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv525976	chr16:47583872-48035026	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv1056126	chr16:47658705-47738655	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:47666200-47729800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr16:47678200-47735000	Weak transcription	Fetal Brain Male	brain
3	chr16:47678400-47730800	Weak transcription	NH-A	brain
4	chr16:47678600-47733200	Weak transcription	NHLF	lung
5	chr16:47685600-47730600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr16:47695800-47735000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr16:47696000-47730200	Weak transcription	NHEK	skin
8	chr16:47696000-47737800	Weak transcription	HMEC	breast
9	chr16:47699400-47735000	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr16:47700800-47731400	Weak transcription	Stomach Mucosa	stomach
11	chr16:47711400-47730200	Weak transcription	Brain Angular Gyrus	brain
12	chr16:47711600-47730400	Weak transcription	Fetal Lung	lung
13	chr16:47711600-47730400	Weak transcription	Spleen	Spleen
14	chr16:47711600-47730600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr16:47711600-47736600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr16:47715600-47733200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr16:47717800-47746600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr16:47718200-47730200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr16:47718400-47730200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr16:47718600-47734600	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr16:47719000-47733200	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr16:47720400-47735000	Strong transcription	Primary B cells from cord blood	blood
23	chr16:47721200-47732200	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr16:47721200-47733200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr16:47721200-47736000	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr16:47721600-47731800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr16:47721600-47732200	Strong transcription	Left Ventricle	heart
28	chr16:47721600-47732600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr16:47721600-47733600	Strong transcription	Liver	Liver
30	chr16:47721600-47733800	Strong transcription	Primary B cells from peripheral blood	blood
31	chr16:47721600-47733800	Strong transcription	Adipose Nuclei	Adipose
32	chr16:47721600-47733800	Strong transcription	Duodenum Smooth Muscle	Duodenum
33	chr16:47721600-47734000	Strong transcription	Primary T helper cells fromperipheralblood	blood
34	chr16:47721800-47732200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr16:47721800-47733600	Strong transcription	Rectal Mucosa Donor 29	rectum
36	chr16:47722000-47731000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr16:47722000-47733400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr16:47722000-47733800	Strong transcription	Skeletal Muscle Female	skeletal muscle
39	chr16:47722200-47733000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr16:47722200-47733600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr16:47722400-47733600	Strong transcription	Primary T cells fromperipheralblood	blood
42	chr16:47722400-47733600	Strong transcription	HepG2	liver
43	chr16:47722600-47733800	Strong transcription	Dnd41	blood
44	chr16:47722800-47731800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr16:47722800-47733400	Strong transcription	Duodenum Mucosa	Duodenum
46	chr16:47722800-47733600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr16:47722800-47733600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr16:47722800-47733600	Strong transcription	Primary T cells from cord blood	blood
49	chr16:47722800-47733600	Strong transcription	Fetal Muscle Trunk	muscle
50	chr16:47722800-47733600	Strong transcription	Stomach Smooth Muscle	stomach

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