Variant report

Variant	rs73547284
Chromosome Location	chr16:47497070-47497071
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr16:47496779-47497503	K562	blood:	n/a	n/a
2	POLR2A	chr16:47497049-47497374	GM12878	blood:	n/a	n/a
3	IRF1	chr16:47496721-47499225	K562	blood:	n/a	chr16:47497667-47497681 chr16:47497667-47497677 chr16:47497669-47497683 chr16:47498902-47498915

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:47493905..47495976-chr16:47496733..47498612,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GPT2-12	chr16:47497009-47497433	NONHSAT142295

Variant related genes	Relation type
ITFG1	TF binding region
ENSG00000129636	Chromatin interaction
ENSG00000102893	Chromatin interaction

Extended variants
information (count: 206 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:192)

rs_ID	r²[population]
rs1011532	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1018171	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10521162	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10521163	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11860257	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11860828	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11861008	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11862096	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11862281	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11862517	1.00[EUR][1000 genomes]
rs11863178	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11865790	0.96[EUR][1000 genomes]
rs1200967	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13330181	1.00[EUR][1000 genomes]
rs13330337	0.92[EUR][1000 genomes]
rs13330510	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13330699	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13330832	1.00[EUR][1000 genomes]
rs13331418	1.00[EUR][1000 genomes]
rs13331748	0.92[EUR][1000 genomes]
rs13332032	1.00[EUR][1000 genomes]
rs13332058	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13332800	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13332953	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13333003	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13334239	1.00[EUR][1000 genomes]
rs13334342	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13335171	1.00[EUR][1000 genomes]
rs13335407	0.92[EUR][1000 genomes]
rs13336943	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13338489	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13339357	1.00[EUR][1000 genomes]
rs13339406	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1541589	1.00[EUR][1000 genomes]
rs16942513	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945353	1.00[EUR][1000 genomes]
rs16945354	1.00[EUR][1000 genomes]
rs16945357	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945358	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945372	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945379	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945382	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945386	1.00[ASN][1000 genomes]
rs16945387	1.00[ASN][1000 genomes]
rs16945401	1.00[ASN][1000 genomes]
rs16945408	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945413	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945430	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945438	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945443	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945460	0.86[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945474	0.84[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945493	1.00[ASN][1000 genomes]
rs16945509	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945543	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945553	0.89[EUR][1000 genomes]
rs16945557	0.92[EUR][1000 genomes]
rs16953992	0.92[EUR][1000 genomes]
rs16954067	0.96[EUR][1000 genomes]
rs16955095	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16955781	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16956024	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16956031	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16956083	1.00[EUR][1000 genomes]
rs16956093	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2046531	0.92[EUR][1000 genomes]
rs2054000	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2062968	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2111226	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2341961	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28448361	0.92[EUR][1000 genomes]
rs28450418	1.00[EUR][1000 genomes]
rs28482463	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28532949	0.96[EUR][1000 genomes]
rs28566542	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28577929	1.00[EUR][1000 genomes]
rs28590410	0.92[EUR][1000 genomes]
rs28597108	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28681341	1.00[EUR][1000 genomes]
rs2880205	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28840689	0.96[EUR][1000 genomes]
rs28844885	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28865322	0.92[EUR][1000 genomes]
rs28898390	1.00[EUR][1000 genomes]
rs56268318	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56819508	1.00[EUR][1000 genomes]
rs56830681	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57543382	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57772915	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57884999	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58190241	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58251914	1.00[EUR][1000 genomes]
rs58550976	0.84[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58837077	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59453301	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59547333	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60200500	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61053970	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61078258	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6598598	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6598602	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7185641	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7185915	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7192537	1.00[EUR][1000 genomes]
rs7193794	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7194190	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7194249	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7195074	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7196244	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7197586	1.00[EUR][1000 genomes]
rs7197659	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7197882	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7197973	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7199392	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7199696	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7199958	1.00[EUR][1000 genomes]
rs7200041	1.00[EUR][1000 genomes]
rs7200149	1.00[EUR][1000 genomes]
rs7200554	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7202716	1.00[EUR][1000 genomes]
rs7204944	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73534789	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73534794	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73536906	0.84[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs73536913	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73536920	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73536936	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73536939	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73538910	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73538974	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73538980	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73538991	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73538993	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73538997	1.00[EUR][1000 genomes]
rs73539001	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73541004	1.00[EUR][1000 genomes]
rs73541007	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73541010	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73541086	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73541089	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73541102	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73543108	1.00[EUR][1000 genomes]
rs73543111	1.00[EUR][1000 genomes]
rs73543118	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73544253	0.92[EUR][1000 genomes]
rs73547271	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73547290	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73547296	1.00[ASN][1000 genomes]
rs73549309	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73549315	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73549319	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73549387	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551204	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551214	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551221	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551224	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551228	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551230	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551233	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551238	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7498593	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7499413	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8044496	0.92[EUR][1000 genomes]
rs8044842	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8046175	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8047342	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8047754	0.92[EUR][1000 genomes]
rs8048233	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8051273	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8052294	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8053323	1.00[EUR][1000 genomes]
rs8054017	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8054582	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8055882	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8062269	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8063584	0.96[EUR][1000 genomes]
rs876258	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9328592	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9328600	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9921542	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9922381	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9922569	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9926490	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9927084	0.96[EUR][1000 genomes]
rs9928466	0.86[EUR][1000 genomes]
rs9929392	0.92[EUR][1000 genomes]
rs9931638	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9932230	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9933052	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9935427	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9936361	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9936580	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1795199	chr16:47111119-47732476	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv916572	chr16:47227786-47646103	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv933151	chr16:47236330-47646103	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	esv2757637	chr16:47261512-47595005	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	esv2758644	chr16:47261512-47606287	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
6	esv2758423	chr16:47316866-47606287	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
7	nsv427983	chr16:47316866-47606287	Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
8	nsv533068	chr16:47354593-47559639	ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
9	nsv833217	chr16:47358148-47527655	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
10	esv34317	chr16:47390600-47672479	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
11	esv1822041	chr16:47399460-47569732	Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
12	nsv572537	chr16:47411203-47599502	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
13	nsv520355	chr16:47424828-48164777	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
14	esv1794084	chr16:47478207-47676184	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:47493200-47497400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr16:47494200-47497600	Active TSS	GM12878-XiMat	blood
3	chr16:47494200-47498200	Active TSS	K562	blood
4	chr16:47494400-47497400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr16:47494400-47498000	Active TSS	Rectal Mucosa Donor 29	rectum
6	chr16:47495800-47498000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr16:47496000-47497800	Weak transcription	Small Intestine	intestine
8	chr16:47496000-47498000	Weak transcription	Spleen	Spleen
9	chr16:47496000-47498200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr16:47496000-47502200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr16:47496200-47497200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr16:47496200-47497200	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr16:47496200-47497200	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr16:47496200-47497200	Enhancers	Primary hematopoietic stem cells	blood
15	chr16:47496200-47497200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr16:47496200-47497200	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr16:47496200-47497200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr16:47496200-47497200	Active TSS	Fetal Brain Female	brain
19	chr16:47496200-47497400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr16:47496200-47497600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr16:47496200-47497800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr16:47496200-47497800	Enhancers	Primary B cells from peripheral blood	blood
23	chr16:47496200-47497800	Weak transcription	Right Ventricle	heart
24	chr16:47496200-47498000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr16:47496200-47498000	Enhancers	Primary T cells from cord blood	blood
26	chr16:47496200-47498000	Weak transcription	Aorta	Aorta
27	chr16:47496200-47498000	Weak transcription	Esophagus	oesophagus
28	chr16:47496200-47498200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr16:47496200-47498200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr16:47496200-47498200	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr16:47496200-47498200	Enhancers	Brain Cingulate Gyrus	brain
32	chr16:47496200-47498400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr16:47496200-47498400	Enhancers	Primary T helper cells fromperipheralblood	blood
34	chr16:47496200-47498400	Enhancers	Brain Angular Gyrus	brain
35	chr16:47496200-47498600	Enhancers	iPS-20b Cell Line	embryonic stem cell
36	chr16:47496200-47499000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr16:47496200-47499200	Weak transcription	HSMMtube	muscle
38	chr16:47496200-47499400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
39	chr16:47496200-47499400	Enhancers	Primary T helper naive cells from peripheral blood	blood
40	chr16:47496200-47499400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
41	chr16:47496200-47499400	Enhancers	Fetal Brain Male	brain
42	chr16:47496200-47499600	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr16:47496200-47500200	Enhancers	Primary T helper cells PMA-I stimulated	--
44	chr16:47496200-47501400	Enhancers	Fetal Heart	heart
45	chr16:47496200-47501400	Weak transcription	Fetal Intestine Small	intestine
46	chr16:47496200-47501400	Weak transcription	Stomach Mucosa	stomach
47	chr16:47496200-47501600	Weak transcription	Gastric	stomach
48	chr16:47496200-47503200	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr16:47496200-47515000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr16:47496200-47526400	Weak transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links