Variant report

Variant	rs7197973
Chromosome Location	chr16:47233120-47233121
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 149 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:131)

rs_ID	r²[population]
rs1018171	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11859615	0.93[EUR][1000 genomes]
rs11860257	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11860969	0.93[EUR][1000 genomes]
rs11861008	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11862517	0.96[EUR][1000 genomes]
rs11865790	0.93[EUR][1000 genomes]
rs13330181	0.96[EUR][1000 genomes]
rs13330194	0.89[EUR][1000 genomes]
rs13330699	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13330832	0.96[EUR][1000 genomes]
rs13331418	0.96[EUR][1000 genomes]
rs13332032	0.96[EUR][1000 genomes]
rs13332800	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13333003	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13334239	0.96[EUR][1000 genomes]
rs13334981	0.89[EUR][1000 genomes]
rs13335171	0.96[EUR][1000 genomes]
rs13336943	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13338489	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13339357	0.96[EUR][1000 genomes]
rs13339406	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1541589	0.96[EUR][1000 genomes]
rs16945353	0.96[EUR][1000 genomes]
rs16945354	0.96[EUR][1000 genomes]
rs16945357	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945358	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945372	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16952126	0.93[EUR][1000 genomes]
rs16952129	0.93[EUR][1000 genomes]
rs16952174	0.93[EUR][1000 genomes]
rs16952501	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16952538	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16952589	0.93[EUR][1000 genomes]
rs16952886	0.93[EUR][1000 genomes]
rs16953067	0.93[EUR][1000 genomes]
rs16953992	0.96[EUR][1000 genomes]
rs16954067	1.00[EUR][1000 genomes]
rs16955095	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16955781	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16956024	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16956031	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16956083	0.96[EUR][1000 genomes]
rs16956093	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2062968	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2078256	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2231981	0.93[EUR][1000 genomes]
rs28450418	0.96[EUR][1000 genomes]
rs28457669	0.93[EUR][1000 genomes]
rs28532949	0.93[EUR][1000 genomes]
rs28566542	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28577929	0.96[EUR][1000 genomes]
rs28681341	0.96[EUR][1000 genomes]
rs28840689	1.00[EUR][1000 genomes]
rs28898390	0.96[EUR][1000 genomes]
rs4386162	0.93[EUR][1000 genomes]
rs56819508	0.96[EUR][1000 genomes]
rs56830681	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57543382	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57772915	0.96[EUR][1000 genomes]
rs57884999	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58251914	0.96[EUR][1000 genomes]
rs58837077	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59305841	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59453301	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59547333	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59992453	0.85[EUR][1000 genomes]
rs60237214	0.93[EUR][1000 genomes]
rs61078258	0.96[EUR][1000 genomes]
rs6598800	0.93[EUR][1000 genomes]
rs7184206	0.93[EUR][1000 genomes]
rs7185641	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7186492	0.93[EUR][1000 genomes]
rs7188942	0.93[EUR][1000 genomes]
rs7192537	0.96[EUR][1000 genomes]
rs7194190	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7197586	0.96[EUR][1000 genomes]
rs7199958	0.96[EUR][1000 genomes]
rs7200041	0.96[EUR][1000 genomes]
rs7200149	0.96[EUR][1000 genomes]
rs7200554	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7201148	0.93[EUR][1000 genomes]
rs7202716	0.96[EUR][1000 genomes]
rs7202975	0.93[EUR][1000 genomes]
rs7204944	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7206669	0.83[EUR][1000 genomes]
rs73536876	0.93[EUR][1000 genomes]
rs73536884	0.93[EUR][1000 genomes]
rs73536895	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73536899	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73538910	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73538974	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73538980	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73538991	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73538993	0.93[EUR][1000 genomes]
rs73538997	0.96[EUR][1000 genomes]
rs73539001	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73541004	0.96[EUR][1000 genomes]
rs73541007	0.96[EUR][1000 genomes]
rs73541010	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73541086	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73541089	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73541102	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73543108	0.96[EUR][1000 genomes]
rs73543111	0.96[EUR][1000 genomes]
rs73543118	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73547271	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73547284	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73547290	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7498593	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7499413	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8044842	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8047754	0.96[EUR][1000 genomes]
rs8048801	0.93[EUR][1000 genomes]
rs8053323	0.96[EUR][1000 genomes]
rs8055882	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8063584	1.00[EUR][1000 genomes]
rs9328592	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9328707	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9921947	0.85[EUR][1000 genomes]
rs9922569	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9922635	0.93[EUR][1000 genomes]
rs9923731	0.93[EUR][1000 genomes]
rs9926965	0.93[EUR][1000 genomes]
rs9927084	0.93[EUR][1000 genomes]
rs9928466	0.89[EUR][1000 genomes]
rs9928688	0.93[EUR][1000 genomes]
rs9932230	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9935641	0.93[EUR][1000 genomes]
rs9936810	0.93[EUR][1000 genomes]
rs9939920	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059456	chr16:46463770-47307580	Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
2	nsv1066115	chr16:46463770-47318415	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
3	esv1798659	chr16:47083332-47234379	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	esv1795199	chr16:47111119-47732476	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	esv1803802	chr16:47115776-47367144	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	nsv906660	chr16:47123724-47347780	Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
7	nsv1059763	chr16:47147194-47373834	ZNF genes & repeats Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
8	nsv528423	chr16:47163874-47347780	Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
9	esv1821100	chr16:47171333-47330244	Bivalent/Poised TSS Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
10	esv1838902	chr16:47177234-47234379	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
11	esv1850542	chr16:47177234-47234379	Weak transcription Bivalent Enhancer Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
12	esv1841006	chr16:47177300-47271876	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
13	esv1848820	chr16:47177300-47271876	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
14	esv1801259	chr16:47188507-47252682	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
15	nsv525170	chr16:47194051-47303635	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
16	esv1821089	chr16:47223418-47330244	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
17	esv1832105	chr16:47223418-47347780	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
18	nsv916572	chr16:47227786-47646103	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:47178800-47296600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr16:47187800-47243800	Weak transcription	HSMM	muscle
3	chr16:47192000-47252000	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr16:47195400-47244200	Weak transcription	Liver	Liver
5	chr16:47210600-47240200	Weak transcription	Primary B cells from cord blood	blood
6	chr16:47216800-47247200	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr16:47217200-47243600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr16:47222800-47250600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr16:47223200-47237600	Weak transcription	Lung	lung
10	chr16:47223400-47247600	Weak transcription	Primary B cells from peripheral blood	blood
11	chr16:47223400-47250000	Weak transcription	Ovary	ovary
12	chr16:47223600-47250200	Weak transcription	Fetal Intestine Small	intestine
13	chr16:47224200-47263000	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr16:47224400-47250200	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr16:47224400-47265600	Weak transcription	HSMMtube	muscle
16	chr16:47224600-47249400	Weak transcription	Primary hematopoietic stem cells	blood
17	chr16:47224800-47251200	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr16:47225000-47250200	Weak transcription	Fetal Intestine Large	intestine
19	chr16:47225400-47237200	Weak transcription	Primary T cells from cord blood	blood
20	chr16:47225400-47247600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr16:47225800-47250000	Weak transcription	Fetal Stomach	stomach
22	chr16:47226200-47249800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr16:47226200-47250000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr16:47226800-47247400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr16:47227000-47249800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr16:47227200-47247400	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr16:47229200-47250000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr16:47229800-47247400	Weak transcription	K562	blood
29	chr16:47230000-47332600	Weak transcription	Thymus	Thymus
30	chr16:47230400-47237400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr16:47231400-47234200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr16:47231800-47233800	Weak transcription	Pancreas	Pancrea
33	chr16:47231800-47250000	Weak transcription	Fetal Muscle Trunk	muscle
34	chr16:47231800-47250800	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr16:47231800-47251400	Weak transcription	Left Ventricle	heart
36	chr16:47231800-47264000	Weak transcription	Aorta	Aorta
37	chr16:47231800-47298600	Weak transcription	Right Ventricle	heart
38	chr16:47232200-47250800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr16:47232200-47250800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr16:47232400-47247600	Weak transcription	Dnd41	blood
41	chr16:47232400-47247800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr16:47232400-47291200	Weak transcription	GM12878-XiMat	blood
43	chr16:47232600-47250800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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