Variant report

Variant	rs7204944
Chromosome Location	chr16:47491761-47491762
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:47490166..47492489-chr16:47495627..47497742,2	MCF-7	breast:
2	chr16:47486141..47491798-chr16:47493044..47496709,8	MCF-7	breast:
3	chr16:47489451..47492163-chr16:47492304..47496167,3	K562	blood:

Variant related genes	Relation type
ENSG00000102893	Chromatin interaction
ENSG00000129636	Chromatin interaction

Extended variants
information (count: 207 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:193)

rs_ID	r²[population]
rs1011532	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1018171	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10521162	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10521163	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11860257	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11860828	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11861008	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11862096	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11862281	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[YRI][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11862517	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11863178	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11865790	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1200967	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13330181	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13330337	0.92[EUR][1000 genomes]
rs13330510	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13330699	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13330832	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13331418	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13331748	0.92[EUR][1000 genomes]
rs13332032	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13332058	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[YRI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13332800	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13332953	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[YRI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13333003	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13334239	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13334342	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.85[YRI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13335171	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13335407	0.92[EUR][1000 genomes]
rs13336943	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13338489	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13339357	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13339406	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1541589	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16942513	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945353	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16945354	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16945357	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945358	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945372	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945379	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945382	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945386	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16945387	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16945401	1.00[ASN][1000 genomes]
rs16945408	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945413	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945430	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945438	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945443	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945460	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945474	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945493	1.00[ASN][1000 genomes]
rs16945509	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945543	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945553	0.89[EUR][1000 genomes]
rs16945557	0.92[EUR][1000 genomes]
rs16953992	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16954067	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16955095	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16955781	1.00[EUR][1000 genomes]
rs16956024	1.00[EUR][1000 genomes]
rs16956031	1.00[EUR][1000 genomes]
rs16956083	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16956093	1.00[EUR][1000 genomes]
rs2054000	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2062968	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2111226	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2341961	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28448361	0.92[EUR][1000 genomes]
rs28450418	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28482463	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28532949	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28566542	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28577929	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28590410	0.92[EUR][1000 genomes]
rs28597108	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28681341	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2880205	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28840689	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28844885	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28865322	0.92[EUR][1000 genomes]
rs28898390	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56268318	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56819508	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56830681	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57543382	1.00[EUR][1000 genomes]
rs57772915	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57884999	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58190241	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58251914	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58550976	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58837077	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59453301	1.00[EUR][1000 genomes]
rs59547333	1.00[EUR][1000 genomes]
rs60200500	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61053970	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61078258	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6598598	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6598602	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7185641	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7185915	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7192537	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7193794	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7194190	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[YRI][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7194249	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7195074	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7196244	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7197586	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7197659	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7197882	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7197973	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7199392	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7199696	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7199958	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7200041	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7200149	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7200554	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7202716	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7202975	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73534789	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73534794	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73536906	0.92[EUR][1000 genomes]
rs73536913	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73536920	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73536936	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73536939	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73538910	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73538974	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73538980	0.92[EUR][1000 genomes]
rs73538991	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73538993	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73538997	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73539001	1.00[EUR][1000 genomes]
rs73541004	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73541007	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73541010	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73541086	1.00[EUR][1000 genomes]
rs73541089	1.00[EUR][1000 genomes]
rs73541102	1.00[EUR][1000 genomes]
rs73543108	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73543111	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73543118	1.00[EUR][1000 genomes]
rs73547271	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73547284	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73547290	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73547296	1.00[ASN][1000 genomes]
rs73549309	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73549315	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73549319	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73549387	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551204	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551214	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551221	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551224	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551228	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551230	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551233	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551238	0.80[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7498593	1.00[EUR][1000 genomes]
rs7499413	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8044496	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8044842	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8046175	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8047342	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8047754	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8048233	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8051273	1.00[EUR][1000 genomes]
rs8052294	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8053323	1.00[ASW][hapmap];0.82[CEU][hapmap];1.00[GIH][hapmap];0.88[TSI][hapmap];0.81[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8054017	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8054582	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8055882	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8062269	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8063584	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs876258	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9328591	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap]
rs9328592	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9328600	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9921542	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9922381	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9922569	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9926490	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9927084	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9928466	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9929392	0.92[EUR][1000 genomes]
rs9931638	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9932230	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9933052	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9935427	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9936361	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9936434	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[YRI][hapmap]
rs9936580	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1795199	chr16:47111119-47732476	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv916572	chr16:47227786-47646103	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv933151	chr16:47236330-47646103	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	esv2757637	chr16:47261512-47595005	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	esv2758644	chr16:47261512-47606287	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
6	esv2758423	chr16:47316866-47606287	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
7	nsv427983	chr16:47316866-47606287	Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
8	nsv533068	chr16:47354593-47559639	ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
9	nsv833217	chr16:47358148-47527655	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
10	esv34317	chr16:47390600-47672479	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
11	esv1822041	chr16:47399460-47569732	Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
12	nsv572537	chr16:47411203-47599502	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
13	nsv520355	chr16:47424828-48164777	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
14	esv1794084	chr16:47478207-47676184	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:47459200-47493400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr16:47459400-47493800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr16:47459600-47493400	Weak transcription	Esophagus	oesophagus
4	chr16:47459800-47493400	Weak transcription	Right Ventricle	heart
5	chr16:47459800-47494400	Weak transcription	Aorta	Aorta
6	chr16:47462000-47493400	Weak transcription	Gastric	stomach
7	chr16:47462000-47493400	Weak transcription	Spleen	Spleen
8	chr16:47472200-47494000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr16:47472400-47493400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr16:47472800-47492600	Weak transcription	Psoas Muscle	Psoas
11	chr16:47477800-47493200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr16:47478600-47493000	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr16:47478800-47492800	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr16:47479400-47492600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr16:47480600-47493200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr16:47481000-47492200	Weak transcription	Ovary	ovary
17	chr16:47481000-47493800	Weak transcription	Lung	lung
18	chr16:47482600-47492800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr16:47482600-47492800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr16:47482600-47493000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr16:47482800-47492400	Strong transcription	Duodenum Smooth Muscle	Duodenum
22	chr16:47482800-47492600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr16:47482800-47492800	Strong transcription	Fetal Muscle Trunk	muscle
24	chr16:47483000-47493200	Weak transcription	Fetal Heart	heart
25	chr16:47483600-47493400	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr16:47484200-47492600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr16:47484200-47492800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr16:47484200-47493200	Weak transcription	Stomach Mucosa	stomach
29	chr16:47484200-47493400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr16:47484400-47492600	Weak transcription	Pancreas	Pancrea
31	chr16:47484400-47493400	Weak transcription	Fetal Brain Male	brain
32	chr16:47484400-47493800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr16:47484800-47492600	Strong transcription	Liver	Liver
34	chr16:47485800-47493600	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr16:47486000-47493400	Weak transcription	Stomach Smooth Muscle	stomach
36	chr16:47486200-47493200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr16:47486200-47493400	Weak transcription	Small Intestine	intestine
38	chr16:47486200-47493400	Weak transcription	Thymus	Thymus
39	chr16:47486200-47493600	Weak transcription	Colonic Mucosa	Colon
40	chr16:47487400-47492600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr16:47487600-47491800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr16:47487600-47491800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
43	chr16:47487600-47492000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr16:47487600-47492200	Weak transcription	Primary T cells from cord blood	blood
45	chr16:47487600-47492600	Weak transcription	Brain Anterior Caudate	brain
46	chr16:47487600-47492600	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr16:47487600-47493200	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr16:47487600-47493400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr16:47487600-47493400	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr16:47487600-47493600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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