Variant report

Variant	rs16945413
Chromosome Location	chr16:47600476-47600477
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:47594118..47597140-chr16:47598345..47602068,5	K562	blood:

Variant related genes	Relation type
ENSG00000259866	Chromatin interaction

Extended variants
information (count: 269 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:258)

rs_ID	r²[population]
rs1011532	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10521162	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10521163	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11860257	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11860828	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11861008	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11862096	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11862281	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11862517	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11863178	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11865790	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[LWK][hapmap];0.85[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1200967	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12102942	1.00[EUR][1000 genomes]
rs13330181	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13330337	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13330510	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13330699	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13330832	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13331418	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13331748	1.00[EUR][1000 genomes]
rs13332032	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13332058	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13332953	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13334239	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13334342	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13334408	1.00[EUR][1000 genomes]
rs13335171	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13335407	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13336200	1.00[EUR][1000 genomes]
rs13336943	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13337281	1.00[EUR][1000 genomes]
rs13337972	1.00[EUR][1000 genomes]
rs13338447	1.00[EUR][1000 genomes]
rs13338489	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13339357	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1486419	1.00[EUR][1000 genomes]
rs1541589	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16942513	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945353	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16945354	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16945357	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945358	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945372	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945379	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945382	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945386	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16945387	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16945401	1.00[ASN][1000 genomes]
rs16945408	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945430	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945438	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945443	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945460	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945474	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945493	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs16945509	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945543	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945553	0.96[EUR][1000 genomes]
rs16945557	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs16945594	1.00[EUR][1000 genomes]
rs16945617	1.00[EUR][1000 genomes]
rs16945621	1.00[EUR][1000 genomes]
rs16945624	1.00[EUR][1000 genomes]
rs16945629	1.00[EUR][1000 genomes]
rs16945641	1.00[EUR][1000 genomes]
rs16945644	1.00[EUR][1000 genomes]
rs16945648	1.00[EUR][1000 genomes]
rs16945650	1.00[EUR][1000 genomes]
rs16945652	1.00[EUR][1000 genomes]
rs16945661	1.00[EUR][1000 genomes]
rs16945662	1.00[EUR][1000 genomes]
rs16955095	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16955781	0.92[EUR][1000 genomes]
rs16956024	0.92[EUR][1000 genomes]
rs16956031	0.92[EUR][1000 genomes]
rs16956083	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16956093	0.92[EUR][1000 genomes]
rs1901903	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1973217	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2046531	1.00[EUR][1000 genomes]
rs2054000	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2101373	1.00[EUR][1000 genomes]
rs2111226	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2341961	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28385551	1.00[EUR][1000 genomes]
rs28448361	1.00[EUR][1000 genomes]
rs28450418	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28482463	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28497443	1.00[EUR][1000 genomes]
rs28532949	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28542319	1.00[EUR][1000 genomes]
rs28566542	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28577066	1.00[EUR][1000 genomes]
rs28577929	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28590410	1.00[EUR][1000 genomes]
rs28597108	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28681341	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28688420	1.00[EUR][1000 genomes]
rs28712810	1.00[EUR][1000 genomes]
rs28754618	1.00[EUR][1000 genomes]
rs2880205	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28844885	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28865322	1.00[EUR][1000 genomes]
rs28898390	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4271615	1.00[EUR][1000 genomes]
rs56268318	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56687111	1.00[EUR][1000 genomes]
rs56819508	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56830681	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57543382	0.92[EUR][1000 genomes]
rs57772915	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57884999	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58190241	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58251914	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58550976	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59453301	0.92[EUR][1000 genomes]
rs59547333	0.92[EUR][1000 genomes]
rs60200500	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61053970	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61078258	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61465994	1.00[EUR][1000 genomes]
rs6598598	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6598602	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6598613	1.00[EUR][1000 genomes]
rs7184358	1.00[EUR][1000 genomes]
rs7185641	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.87[LWK][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7185753	1.00[EUR][1000 genomes]
rs7185915	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7186530	1.00[EUR][1000 genomes]
rs7186864	1.00[EUR][1000 genomes]
rs7186924	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7187134	1.00[EUR][1000 genomes]
rs7187393	1.00[EUR][1000 genomes]
rs7189446	1.00[EUR][1000 genomes]
rs7190399	1.00[EUR][1000 genomes]
rs7192029	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7192537	0.92[EUR][1000 genomes]
rs7193794	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7194190	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7194249	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7195074	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7196244	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7197471	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7197586	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7197659	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7197882	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7199392	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7199696	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7199958	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7200041	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7200149	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7200406	1.00[EUR][1000 genomes]
rs7200554	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7201764	1.00[EUR][1000 genomes]
rs7202145	1.00[EUR][1000 genomes]
rs7202175	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs7202457	1.00[EUR][1000 genomes]
rs7202612	1.00[EUR][1000 genomes]
rs7202716	0.92[EUR][1000 genomes]
rs7203019	1.00[EUR][1000 genomes]
rs7204944	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73534789	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73534794	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73536704	1.00[EUR][1000 genomes]
rs73536906	1.00[EUR][1000 genomes]
rs73536913	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73536920	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73536936	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73536939	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73538997	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73539001	0.92[EUR][1000 genomes]
rs73541004	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73541007	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73541010	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73541086	0.92[EUR][1000 genomes]
rs73541089	0.92[EUR][1000 genomes]
rs73541102	0.92[EUR][1000 genomes]
rs73543108	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73543111	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73543118	0.92[EUR][1000 genomes]
rs73544253	1.00[EUR][1000 genomes]
rs73544267	1.00[EUR][1000 genomes]
rs73544271	1.00[EUR][1000 genomes]
rs73544281	1.00[EUR][1000 genomes]
rs73544284	1.00[EUR][1000 genomes]
rs73546131	1.00[EUR][1000 genomes]
rs73546132	1.00[EUR][1000 genomes]
rs73546138	1.00[EUR][1000 genomes]
rs73546141	1.00[EUR][1000 genomes]
rs73546143	1.00[EUR][1000 genomes]
rs73547271	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73547284	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73547290	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73547296	1.00[ASN][1000 genomes]
rs73549309	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73549315	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73549319	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73549387	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551204	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551214	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551221	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551224	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551228	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551230	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551233	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551238	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73552163	1.00[EUR][1000 genomes]
rs73552167	1.00[EUR][1000 genomes]
rs7498593	0.92[EUR][1000 genomes]
rs7499413	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8044496	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8046175	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8046259	1.00[EUR][1000 genomes]
rs8047342	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8048233	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8048279	1.00[EUR][1000 genomes]
rs8049111	1.00[EUR][1000 genomes]
rs8051273	0.92[EUR][1000 genomes]
rs8052294	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8053042	1.00[EUR][1000 genomes]
rs8053323	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8054017	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8054582	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8055624	1.00[EUR][1000 genomes]
rs8055695	1.00[EUR][1000 genomes]
rs8061062	1.00[EUR][1000 genomes]
rs8061556	1.00[EUR][1000 genomes]
rs8061656	1.00[EUR][1000 genomes]
rs8062269	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs876258	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[YRI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9328591	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs9328592	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9328600	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9746012	1.00[EUR][1000 genomes]
rs9746020	1.00[EUR][1000 genomes]
rs9746028	0.92[EUR][1000 genomes]
rs9921542	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9922381	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9922569	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9923591	1.00[EUR][1000 genomes]
rs9926490	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9926971	1.00[EUR][1000 genomes]
rs9927084	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9927829	1.00[EUR][1000 genomes]
rs9929392	1.00[EUR][1000 genomes]
rs9929794	1.00[EUR][1000 genomes]
rs9930026	1.00[EUR][1000 genomes]
rs9931638	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9932128	1.00[EUR][1000 genomes]
rs9932230	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9933052	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9934478	0.96[EUR][1000 genomes]
rs9935427	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9935542	1.00[EUR][1000 genomes]
rs9936361	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9936434	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs9936580	1.00[EUR][1000 genomes]
rs9940610	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1795199	chr16:47111119-47732476	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv916572	chr16:47227786-47646103	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv933151	chr16:47236330-47646103	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	esv2758644	chr16:47261512-47606287	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	esv2758423	chr16:47316866-47606287	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	nsv427983	chr16:47316866-47606287	Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
7	esv34317	chr16:47390600-47672479	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
8	nsv520355	chr16:47424828-48164777	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
9	esv1794084	chr16:47478207-47676184	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
10	nsv525976	chr16:47583872-48035026	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
11	nsv974811	chr16:47599013-47613849	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:47548800-47605000	Weak transcription	Right Ventricle	heart
2	chr16:47581000-47615800	Weak transcription	Placenta	Placenta
3	chr16:47581000-47624200	Weak transcription	Brain Substantia Nigra	brain
4	chr16:47581200-47624600	Weak transcription	Colonic Mucosa	Colon
5	chr16:47581200-47627400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr16:47581400-47641800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr16:47581800-47621400	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr16:47582000-47608200	Weak transcription	Fetal Thymus	thymus
9	chr16:47582000-47624200	Weak transcription	Fetal Kidney	kidney
10	chr16:47582200-47625000	Weak transcription	Fetal Heart	heart
11	chr16:47584600-47600600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr16:47584600-47604200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr16:47584600-47607000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr16:47584600-47624400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr16:47584600-47624400	Weak transcription	Colon Smooth Muscle	Colon
16	chr16:47584800-47601800	Weak transcription	Brain Hippocampus Middle	brain
17	chr16:47584800-47622600	Weak transcription	Brain Angular Gyrus	brain
18	chr16:47586200-47605800	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr16:47586800-47600600	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr16:47588000-47607400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr16:47588200-47606600	Weak transcription	Duodenum Mucosa	Duodenum
22	chr16:47588200-47622600	Weak transcription	Fetal Lung	lung
23	chr16:47588400-47605200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr16:47588400-47608400	Weak transcription	Thymus	Thymus
25	chr16:47588400-47622600	Weak transcription	Rectal Smooth Muscle	rectum
26	chr16:47588600-47615200	Weak transcription	Liver	Liver
27	chr16:47588600-47615800	Weak transcription	Fetal Muscle Trunk	muscle
28	chr16:47588600-47622600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr16:47588600-47622600	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr16:47588800-47605200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr16:47588800-47606400	Weak transcription	Lung	lung
32	chr16:47588800-47607200	Weak transcription	Esophagus	oesophagus
33	chr16:47588800-47607200	Weak transcription	Pancreas	Pancrea
34	chr16:47588800-47624600	Weak transcription	Gastric	stomach
35	chr16:47589400-47601400	Weak transcription	Dnd41	blood
36	chr16:47589400-47622400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr16:47594600-47605400	Weak transcription	Fetal Muscle Leg	muscle
38	chr16:47596600-47605400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr16:47596600-47627200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr16:47596800-47600800	Weak transcription	Brain Anterior Caudate	brain
41	chr16:47597000-47605400	Weak transcription	Primary B cells from peripheral blood	blood
42	chr16:47597200-47605200	Weak transcription	HepG2	liver
43	chr16:47597200-47622600	Weak transcription	HSMMtube	muscle
44	chr16:47597600-47600600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
45	chr16:47598400-47602000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
46	chr16:47598800-47600800	Enhancers	Primary neutrophils fromperipheralblood	blood
47	chr16:47598800-47601000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
48	chr16:47598800-47602000	Enhancers	Primary T helper cells PMA-I stimulated	--
49	chr16:47598800-47604000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
50	chr16:47599000-47600800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links