Variant report

Variant	rs16945474
Chromosome Location	chr16:47697618-47697619
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 277 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:273)

rs_ID	r²[population]
rs1011532	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10492847	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10521162	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10521163	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11860257	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11860828	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11861008	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11862096	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11862281	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11863178	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11865790	0.89[EUR][1000 genomes]
rs1200967	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12102942	1.00[EUR][1000 genomes]
rs13330337	1.00[EUR][1000 genomes]
rs13330510	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13330632	0.85[AMR][1000 genomes]
rs13330699	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13331748	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13332058	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13332953	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13334239	0.92[EUR][1000 genomes]
rs13334342	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13334408	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13335407	1.00[EUR][1000 genomes]
rs13336200	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13336943	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13337281	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13337810	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13337972	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13338447	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13338489	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13338849	0.85[AMR][1000 genomes]
rs13339357	0.92[EUR][1000 genomes]
rs1486419	1.00[EUR][1000 genomes]
rs16942513	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945353	0.92[EUR][1000 genomes]
rs16945354	0.92[EUR][1000 genomes]
rs16945357	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945358	0.86[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945372	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945379	0.84[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945382	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945386	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16945387	1.00[ASN][1000 genomes]
rs16945401	1.00[ASN][1000 genomes]
rs16945408	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945413	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945430	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945438	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945443	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945460	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945493	1.00[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16945509	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945543	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945553	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16945557	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[YRI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16945594	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16945617	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16945621	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16945624	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16945629	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16945641	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16945644	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16945648	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16945650	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16945652	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16945661	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16945662	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16945673	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16945694	0.81[AMR][1000 genomes]
rs1901903	1.00[EUR][1000 genomes]
rs1973217	0.81[EUR][1000 genomes]
rs2046531	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2054000	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2101373	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2111226	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2341961	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28385551	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28418647	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28434188	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28440861	0.85[AMR][1000 genomes]
rs28448361	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28454787	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28482463	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28496502	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28497443	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28539472	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28539843	0.85[AMR][1000 genomes]
rs28542319	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28566036	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28566542	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28577066	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28581476	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28589989	0.85[AMR][1000 genomes]
rs28590410	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28597108	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28606368	0.84[EUR][1000 genomes]
rs28630392	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28679750	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28688420	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28688663	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28690829	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28691740	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28712810	1.00[EUR][1000 genomes]
rs28715928	0.84[EUR][1000 genomes]
rs28754618	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2880205	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28844885	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28853924	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28865322	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3852743	0.85[AMR][1000 genomes]
rs3903067	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4271615	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56268318	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56687111	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56830681	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57543382	0.80[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs57884999	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57930434	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58190241	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58251914	0.92[EUR][1000 genomes]
rs58550976	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60049376	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60200500	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60943725	0.85[AMR][1000 genomes]
rs61053970	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61115457	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61465994	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6598598	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6598602	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6598613	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7184358	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7185641	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7185753	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7185915	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7186530	1.00[EUR][1000 genomes]
rs7186864	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7186924	0.92[EUR][1000 genomes]
rs7187134	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7187393	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7189446	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7190225	0.81[AMR][1000 genomes]
rs7190399	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7192029	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[YRI][hapmap]
rs7192537	0.92[EUR][1000 genomes]
rs7193794	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7194190	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7194249	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7195074	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7196244	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7197471	1.00[EUR][1000 genomes]
rs7197586	0.92[EUR][1000 genomes]
rs7197659	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7197882	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7198908	0.85[AMR][1000 genomes]
rs7199392	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7199696	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7200041	0.92[EUR][1000 genomes]
rs7200406	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7200554	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7201764	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7202145	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7202175	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7202457	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7202612	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7202716	0.92[EUR][1000 genomes]
rs7203019	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7204944	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs728884	0.84[EUR][1000 genomes]
rs73534789	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73534794	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73536704	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73536711	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73536717	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73536721	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73536725	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73536729	0.84[EUR][1000 genomes]
rs73536749	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73536752	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73536754	0.85[AMR][1000 genomes]
rs73536758	0.85[AMR][1000 genomes]
rs73536779	0.85[AMR][1000 genomes]
rs73536785	0.85[AMR][1000 genomes]
rs73536906	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73536913	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73536920	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73536936	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73536939	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73543108	0.92[EUR][1000 genomes]
rs73543111	0.92[EUR][1000 genomes]
rs73543118	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs73544253	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73544267	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73544271	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73544281	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73544284	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73546131	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73546132	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73546138	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73546141	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73546143	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73547271	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73547284	0.84[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73547290	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73547296	1.00[ASN][1000 genomes]
rs73549309	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73549315	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73549319	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73549387	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551204	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551214	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551221	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551224	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551228	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551230	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551233	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551238	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73552163	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73552167	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8044496	1.00[EUR][1000 genomes]
rs8046175	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8046259	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8047342	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8048233	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8048279	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8049111	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8051273	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8052294	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8053042	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8054017	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8054582	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8055624	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8055695	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8061062	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8061556	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8061656	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8062269	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8064193	0.84[EUR][1000 genomes]
rs876258	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9328592	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9328600	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9746012	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9746020	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9746028	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9921542	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9922381	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9922569	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9923591	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9924657	0.81[AMR][1000 genomes]
rs9926490	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9926598	0.81[AMR][1000 genomes]
rs9926971	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9927096	0.84[EUR][1000 genomes]
rs9927438	0.84[EUR][1000 genomes]
rs9927787	0.85[AMR][1000 genomes]
rs9927829	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9929392	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9929794	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9930026	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9931638	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9932128	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9932230	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9933052	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9934478	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9934668	0.84[EUR][1000 genomes]
rs9935427	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9935542	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9936361	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9936434	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs9936580	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9937177	0.85[AMR][1000 genomes]
rs9938346	0.85[AMR][1000 genomes]
rs9940610	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1795199	chr16:47111119-47732476	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv520355	chr16:47424828-48164777	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv525976	chr16:47583872-48035026	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv1056126	chr16:47658705-47738655	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16945474	Hs.42217	cis	multi-tissue	Pritchard

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:47626600-47724600	Weak transcription	Small Intestine	intestine
2	chr16:47661200-47709200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr16:47661400-47697800	Weak transcription	Stomach Mucosa	stomach
4	chr16:47666200-47729800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr16:47671000-47710800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr16:47671400-47698800	Weak transcription	Fetal Intestine Small	intestine
7	chr16:47678200-47735000	Weak transcription	Fetal Brain Male	brain
8	chr16:47678400-47697800	Weak transcription	Fetal Stomach	stomach
9	chr16:47678400-47699400	Weak transcription	Esophagus	oesophagus
10	chr16:47678400-47722800	Weak transcription	NHDF-Ad	bronchial
11	chr16:47678400-47730800	Weak transcription	NH-A	brain
12	chr16:47678600-47733200	Weak transcription	NHLF	lung
13	chr16:47680600-47711600	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr16:47681400-47710800	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr16:47681800-47700200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr16:47683400-47710800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr16:47685000-47717400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr16:47685600-47730600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr16:47687400-47700400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr16:47688200-47710800	Weak transcription	Fetal Thymus	thymus
21	chr16:47688200-47727000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr16:47688200-47727200	Weak transcription	Hela-S3	cervix
23	chr16:47689600-47711600	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr16:47690200-47704200	Strong transcription	Adipose Nuclei	Adipose
25	chr16:47690400-47698800	Strong transcription	Primary T cells from cord blood	blood
26	chr16:47690400-47703800	Strong transcription	Primary B cells from peripheral blood	blood
27	chr16:47691000-47698800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr16:47692200-47700200	Weak transcription	Lung	lung
29	chr16:47692200-47709000	Weak transcription	Pancreas	Pancrea
30	chr16:47693000-47710600	Weak transcription	Fetal Heart	heart
31	chr16:47693600-47698400	Strong transcription	Primary T cells fromperipheralblood	blood
32	chr16:47693600-47709400	Weak transcription	Rectal Smooth Muscle	rectum
33	chr16:47694400-47702200	Strong transcription	Primary T helper cells fromperipheralblood	blood
34	chr16:47694400-47703600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr16:47694600-47697800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr16:47694600-47698200	Strong transcription	Primary T helper cells PMA-I stimulated	--
37	chr16:47694600-47705000	Strong transcription	Left Ventricle	heart
38	chr16:47694600-47705800	Strong transcription	Skeletal Muscle Female	skeletal muscle
39	chr16:47694800-47698000	Strong transcription	HUVEC	blood vessel
40	chr16:47695200-47709000	Weak transcription	Right Ventricle	heart
41	chr16:47695200-47709200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr16:47695200-47709400	Weak transcription	Psoas Muscle	Psoas
43	chr16:47695200-47710600	Weak transcription	Brain Angular Gyrus	brain
44	chr16:47695400-47700200	Weak transcription	Aorta	Aorta
45	chr16:47695400-47708600	Weak transcription	Gastric	stomach
46	chr16:47695400-47710200	Weak transcription	Brain Hippocampus Middle	brain
47	chr16:47695600-47697800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
48	chr16:47695600-47702200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr16:47695600-47709400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr16:47695800-47709200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links