Variant report

Variant	rs28539472
Chromosome Location	chr16:47884262-47884263
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:47878462..47880186-chr16:47883805..47885785,2	K562	blood:

Extended variants
information (count: 264 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:260)

rs_ID	r²[population]
rs1011532	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes]
rs10492847	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10521162	0.96[EUR][1000 genomes]
rs10521163	0.96[EUR][1000 genomes]
rs11076576	0.82[EUR][1000 genomes]
rs11860828	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes]
rs11862281	0.96[EUR][1000 genomes]
rs1200967	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12102746	0.82[EUR][1000 genomes]
rs12102755	0.82[EUR][1000 genomes]
rs12102942	0.96[EUR][1000 genomes]
rs12102967	0.82[EUR][1000 genomes]
rs12103248	0.82[EUR][1000 genomes]
rs12103260	0.82[EUR][1000 genomes]
rs13330337	0.96[EUR][1000 genomes]
rs13330510	0.96[EUR][1000 genomes]
rs13330632	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13331659	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13331748	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13332058	0.96[EUR][1000 genomes]
rs13333024	0.82[EUR][1000 genomes]
rs13333199	0.82[EUR][1000 genomes]
rs13334408	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13335407	0.96[EUR][1000 genomes]
rs13336200	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13337281	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13337671	0.82[EUR][1000 genomes]
rs13337810	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13337972	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13338447	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13338849	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13339608	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1486419	0.96[EUR][1000 genomes]
rs16942513	0.96[EUR][1000 genomes]
rs16945430	0.93[EUR][1000 genomes]
rs16945438	0.96[EUR][1000 genomes]
rs16945443	0.96[EUR][1000 genomes]
rs16945460	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16945474	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16945493	0.89[ASW][hapmap];1.00[CHB][hapmap]
rs16945509	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16945543	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16945553	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16945557	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[YRI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16945594	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16945617	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16945621	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16945624	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16945629	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16945641	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16945644	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16945648	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16945650	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16945652	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16945661	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16945662	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16945673	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945694	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1901903	0.96[EUR][1000 genomes]
rs2046531	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2054000	0.96[EUR][1000 genomes]
rs2101373	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2341961	0.96[EUR][1000 genomes]
rs28375672	0.82[EUR][1000 genomes]
rs28385551	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28409782	0.82[EUR][1000 genomes]
rs28412153	0.82[EUR][1000 genomes]
rs28418647	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28434188	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28440861	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28448361	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28454787	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28496502	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28497443	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28539843	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28542319	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28566036	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28577066	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28581476	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28589989	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28590410	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28597108	0.96[EUR][1000 genomes]
rs28606368	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28630392	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28656465	0.82[EUR][1000 genomes]
rs28679750	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28680748	0.86[AMR][1000 genomes]
rs28688420	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28688663	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28690829	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28691740	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28712810	0.96[EUR][1000 genomes]
rs28715928	0.87[EUR][1000 genomes]
rs28754618	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2880205	0.96[EUR][1000 genomes]
rs28853924	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28854517	0.82[EUR][1000 genomes]
rs28865322	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3852743	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3903067	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3950354	0.82[EUR][1000 genomes]
rs4271615	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4785551	1.00[MEX][hapmap]
rs56268318	0.96[EUR][1000 genomes]
rs56687111	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57930434	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs58190241	0.96[EUR][1000 genomes]
rs58550976	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60049376	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60201061	0.82[EUR][1000 genomes]
rs60943725	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61053970	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61115457	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61326782	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61465994	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6500318	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs6500409	0.90[AMR][1000 genomes]
rs6598598	0.96[EUR][1000 genomes]
rs6598602	0.96[EUR][1000 genomes]
rs6598613	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7184358	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7185753	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7186530	0.96[EUR][1000 genomes]
rs7186864	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7186924	0.89[EUR][1000 genomes]
rs7187134	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7187393	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7187488	0.82[EUR][1000 genomes]
rs7189446	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7190225	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7190399	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7192029	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[YRI][hapmap]
rs7193023	0.82[EUR][1000 genomes]
rs7193794	0.96[EUR][1000 genomes]
rs7193945	0.82[EUR][1000 genomes]
rs7195074	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs7197471	0.96[EUR][1000 genomes]
rs7197882	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes]
rs7198023	0.82[EUR][1000 genomes]
rs7198908	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7199392	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes]
rs7200406	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7201764	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7202145	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7202175	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];0.83[MKK][hapmap];0.88[TSI][hapmap]
rs7202457	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7202612	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7203019	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7205263	0.82[EUR][1000 genomes]
rs7205736	0.82[EUR][1000 genomes]
rs728884	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73534789	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73534794	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73536704	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73536711	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73536717	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73536721	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73536725	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73536729	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73536749	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73536752	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73536754	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73536758	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73536770	0.82[EUR][1000 genomes]
rs73536779	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73536785	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73536798	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73536906	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73536913	0.96[EUR][1000 genomes]
rs73536920	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73536936	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73536939	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73539129	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73539135	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73539141	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73539146	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73544253	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73544267	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73544271	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73544281	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73544284	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73546131	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73546132	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73546138	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73546141	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73546143	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73551214	0.96[EUR][1000 genomes]
rs73551221	0.96[EUR][1000 genomes]
rs73551224	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73551228	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73551230	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73551233	0.96[EUR][1000 genomes]
rs73551238	0.96[EUR][1000 genomes]
rs73552163	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73552167	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8043743	0.82[EUR][1000 genomes]
rs8044496	0.96[EUR][1000 genomes]
rs8046175	0.96[EUR][1000 genomes]
rs8046259	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8047342	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8048233	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8048279	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8049111	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8050977	0.82[EUR][1000 genomes]
rs8052294	0.96[EUR][1000 genomes]
rs8053042	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8053678	0.82[EUR][1000 genomes]
rs8054017	0.96[EUR][1000 genomes]
rs8054264	0.82[EUR][1000 genomes]
rs8054582	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes]
rs8054830	0.82[EUR][1000 genomes]
rs8055624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8055695	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8055999	0.82[EUR][1000 genomes]
rs8059334	0.82[EUR][1000 genomes]
rs8061062	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8061556	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8061656	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8062269	0.96[EUR][1000 genomes]
rs8062495	0.82[EUR][1000 genomes]
rs8062847	0.82[EUR][1000 genomes]
rs8064036	0.82[EUR][1000 genomes]
rs8064193	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs876258	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes]
rs918178	0.82[EUR][1000 genomes]
rs9328600	0.96[EUR][1000 genomes]
rs9746012	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9746020	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9746028	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9921542	0.96[EUR][1000 genomes]
rs9922381	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes]
rs9923591	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9924657	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9924916	0.82[EUR][1000 genomes]
rs9926150	0.82[EUR][1000 genomes]
rs9926598	0.90[AMR][1000 genomes]
rs9926971	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9927096	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9927438	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9927787	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9927829	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9929392	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9929794	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9930026	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9931638	0.96[EUR][1000 genomes]
rs9931666	0.82[EUR][1000 genomes]
rs9932128	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9933191	0.82[EUR][1000 genomes]
rs9934384	0.82[EUR][1000 genomes]
rs9934478	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9934668	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9935542	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9936580	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9937177	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9937514	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9938346	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9938516	0.82[EUR][1000 genomes]
rs9939949	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9940448	0.82[EUR][1000 genomes]
rs9940610	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520355	chr16:47424828-48164777	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv525976	chr16:47583872-48035026	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv428657	chr16:47748036-47913816	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv833218	chr16:47869819-48051745	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:47880400-47885600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr16:47880600-47885800	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr16:47881000-47885400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr16:47881200-47885400	Enhancers	Brain Cingulate Gyrus	brain
5	chr16:47881800-47885400	Enhancers	Brain Hippocampus Middle	brain
6	chr16:47882800-47884800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr16:47882800-47889200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr16:47883000-47884400	Weak transcription	Fetal Stomach	stomach
9	chr16:47883000-47884600	Weak transcription	Fetal Brain Male	brain
10	chr16:47883000-47890600	Weak transcription	Fetal Brain Female	brain
11	chr16:47883200-47889800	Weak transcription	Gastric	stomach
12	chr16:47883400-47884800	Weak transcription	Brain Germinal Matrix	brain
13	chr16:47883400-47899600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr16:47883800-47884800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr16:47883800-47885200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr16:47883800-47893000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr16:47884000-47885000	Weak transcription	Brain Angular Gyrus	brain
18	chr16:47884000-47885000	Weak transcription	Brain Substantia Nigra	brain
19	chr16:47884000-47885200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr16:47884200-47884600	Weak transcription	Brain Anterior Caudate	brain
21	chr16:47884200-47884600	Weak transcription	Brain Inferior Temporal Lobe	brain

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