Variant report

Variant	rs58550976
Chromosome Location	chr16:47765762-47765763
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 266 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:263)

rs_ID	r²[population]
rs1011532	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10492847	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10521162	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10521163	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11860828	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11861008	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11862096	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11862281	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11863178	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1200967	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12102942	1.00[EUR][1000 genomes]
rs13330337	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13330510	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13330632	0.90[AMR][1000 genomes]
rs13330699	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13331659	0.90[AMR][1000 genomes]
rs13331748	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13332058	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13332953	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13334342	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13334408	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13335407	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13336200	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13336943	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13337281	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13337810	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13337972	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13338447	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13338489	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13338849	0.90[AMR][1000 genomes]
rs13339608	0.84[AMR][1000 genomes]
rs1486419	1.00[EUR][1000 genomes]
rs16942513	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945357	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945358	0.86[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945372	0.84[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945379	0.84[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945382	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945386	1.00[ASN][1000 genomes]
rs16945387	1.00[ASN][1000 genomes]
rs16945401	1.00[ASN][1000 genomes]
rs16945408	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945413	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945430	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945438	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945443	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945460	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945474	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945493	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16945509	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945543	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945553	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16945557	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16945594	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16945617	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16945621	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16945624	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16945629	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16945641	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16945644	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16945648	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16945650	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16945652	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16945661	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16945662	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16945673	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16945694	0.86[AMR][1000 genomes]
rs1901903	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1973217	0.81[EUR][1000 genomes]
rs2046531	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2054000	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2101373	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2111226	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2341961	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28385551	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28418647	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28434188	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28440861	0.90[AMR][1000 genomes]
rs28448361	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28454787	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28482463	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28496502	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28497443	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28539472	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28539843	0.90[AMR][1000 genomes]
rs28542319	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28566036	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28566542	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28577066	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28581476	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28589989	0.90[AMR][1000 genomes]
rs28590410	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28597108	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28606368	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28630392	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28679750	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28680748	0.82[AMR][1000 genomes]
rs28688420	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28688663	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28690829	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28691740	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28712810	1.00[EUR][1000 genomes]
rs28715928	0.84[EUR][1000 genomes]
rs28754618	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2880205	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28844885	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28853924	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28865322	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3852743	0.90[AMR][1000 genomes]
rs3903067	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4271615	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56268318	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56687111	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57884999	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57930434	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58190241	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60049376	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60200500	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60943725	0.90[AMR][1000 genomes]
rs61053970	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61115457	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61326782	0.90[AMR][1000 genomes]
rs61465994	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6500409	0.86[AMR][1000 genomes]
rs6598598	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6598602	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6598613	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7184358	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7185753	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7185915	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7186530	1.00[EUR][1000 genomes]
rs7186864	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7186924	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7187134	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7187393	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7189446	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7190225	0.86[AMR][1000 genomes]
rs7190399	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7193794	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7194190	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7194249	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7195074	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7196244	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7197471	1.00[EUR][1000 genomes]
rs7197659	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7197882	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7198908	0.90[AMR][1000 genomes]
rs7199392	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7199696	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7200406	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7200554	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7201764	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7202145	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7202457	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7202612	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7203019	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7204944	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs728884	0.84[EUR][1000 genomes]
rs73534789	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73534794	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73536704	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73536711	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73536717	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73536721	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73536725	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73536729	0.84[EUR][1000 genomes]
rs73536749	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73536752	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73536754	0.90[AMR][1000 genomes]
rs73536758	0.90[AMR][1000 genomes]
rs73536779	0.90[AMR][1000 genomes]
rs73536785	0.90[AMR][1000 genomes]
rs73536906	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73536913	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73536920	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73536936	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73536939	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73539129	0.84[AMR][1000 genomes]
rs73539135	0.90[AMR][1000 genomes]
rs73539141	0.90[AMR][1000 genomes]
rs73544253	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73544267	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73544271	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73544281	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73544284	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73546131	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73546132	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73546138	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73546141	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73546143	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73547271	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73547284	0.84[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73547290	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73547296	1.00[ASN][1000 genomes]
rs73549309	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73549315	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73549319	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73549387	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551204	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551214	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551221	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551224	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551228	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551230	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551233	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73551238	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73552163	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73552167	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8044496	1.00[EUR][1000 genomes]
rs8046175	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8046259	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8047342	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8048233	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8048279	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8049111	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8051273	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8052294	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8053042	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8054017	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8054582	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8055624	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8055695	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8061062	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8061556	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8061656	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8062269	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8064193	0.84[EUR][1000 genomes]
rs876258	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9328592	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9328600	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9746012	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9746020	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9746028	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9921542	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9922381	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9922569	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9923591	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9924657	0.86[AMR][1000 genomes]
rs9926490	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9926598	0.86[AMR][1000 genomes]
rs9926971	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9927096	0.84[EUR][1000 genomes]
rs9927438	0.84[EUR][1000 genomes]
rs9927787	0.90[AMR][1000 genomes]
rs9927829	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9929392	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9929794	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9930026	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9931638	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9932128	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9932230	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9933052	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9934478	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9934668	0.84[EUR][1000 genomes]
rs9935427	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9935542	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9936361	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9936580	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9937177	0.90[AMR][1000 genomes]
rs9937514	0.90[AMR][1000 genomes]
rs9938346	0.90[AMR][1000 genomes]
rs9939949	0.90[AMR][1000 genomes]
rs9940610	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520355	chr16:47424828-48164777	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv525976	chr16:47583872-48035026	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv428657	chr16:47748036-47913816	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:47762600-47766000	Weak transcription	HUVEC	blood vessel
2	chr16:47762600-47766400	Weak transcription	Stomach Mucosa	stomach
3	chr16:47763600-47769400	Enhancers	HMEC	breast
4	chr16:47764000-47766200	Weak transcription	Fetal Brain Male	brain
5	chr16:47764000-47767800	Enhancers	NHLF	lung
6	chr16:47764200-47766400	Enhancers	NHEK	skin
7	chr16:47764400-47767000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr16:47764600-47766400	Enhancers	Osteobl	bone
9	chr16:47764600-47768000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr16:47764800-47766400	Enhancers	NH-A	brain
11	chr16:47764800-47766600	Enhancers	Muscle Satellite Cultured Cells	--
12	chr16:47764800-47767200	Enhancers	NHDF-Ad	bronchial
13	chr16:47764800-47767800	Enhancers	HSMM	muscle
14	chr16:47764800-47768200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr16:47765000-47767800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr16:47765000-47768000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr16:47765000-47768200	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr16:47765000-47769200	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr16:47765200-47766200	Weak transcription	A549	lung
20	chr16:47765200-47767800	Enhancers	H1 Cell Line	embryonic stem cell
21	chr16:47765200-47768200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr16:47765200-47768200	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr16:47765200-47769600	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr16:47765400-47766000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr16:47765400-47766400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr16:47765400-47766400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr16:47765400-47766600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr16:47765400-47766800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr16:47765600-47766000	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr16:47765600-47766600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr16:47765600-47766600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr16:47765600-47768400	Enhancers	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links