Variant report
| Variant | rs9745827 |
|---|---|
| Chromosome Location | chr16:47805996-47805997 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs10492847 | 0.81[AFR][1000 genomes] |
| rs13331748 | 0.84[AFR][1000 genomes] |
| rs13337810 | 0.81[AFR][1000 genomes] |
| rs13338849 | 0.81[AFR][1000 genomes] |
| rs16945553 | 0.82[AFR][1000 genomes] |
| rs16945557 | 0.82[AFR][1000 genomes] |
| rs16945661 | 0.84[AFR][1000 genomes] |
| rs28542319 | 0.87[AFR][1000 genomes] |
| rs28590410 | 0.82[AFR][1000 genomes] |
| rs28606368 | 0.81[AFR][1000 genomes] |
| rs28691740 | 0.81[AFR][1000 genomes] |
| rs28865322 | 0.88[AFR][1000 genomes] |
| rs3903067 | 0.81[AFR][1000 genomes] |
| rs7184358 | 0.87[AFR][1000 genomes] |
| rs73536721 | 0.87[AFR][1000 genomes] |
| rs73536754 | 0.81[AFR][1000 genomes] |
| rs73536758 | 0.81[AFR][1000 genomes] |
| rs73536779 | 0.81[AFR][1000 genomes] |
| rs73536936 | 0.81[AFR][1000 genomes] |
| rs73536939 | 0.81[AFR][1000 genomes] |
| rs73544253 | 0.82[AFR][1000 genomes] |
| rs73544267 | 0.88[AFR][1000 genomes] |
| rs73544271 | 0.85[AFR][1000 genomes] |
| rs73544281 | 0.87[AFR][1000 genomes] |
| rs73544284 | 0.82[AFR][1000 genomes] |
| rs8047342 | 0.81[AFR][1000 genomes] |
| rs8048233 | 0.81[AFR][1000 genomes] |
| rs9746613 | 0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs9927829 | 0.88[AFR][1000 genomes] |
| rs9929392 | 0.83[AFR][1000 genomes] |
| rs9936580 | 0.88[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv520355 | chr16:47424828-48164777 | Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 27 gene(s) | inside rSNPs | diseases |
| 2 | nsv525976 | chr16:47583872-48035026 | Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
| 3 | nsv428657 | chr16:47748036-47913816 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv1055833 | chr16:47776838-47875609 | Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr16:47805800-47808400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
