Variant report

Variant	rs4790961
Chromosome Location	chr17:63097079-63097080
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:63051381..63054935-chr17:63092846..63100708,11	MCF-7	breast:
2	chr17:62969521..62973434-chr17:63095329..63098484,3	MCF-7	breast:
3	chr17:63051785..63054961-chr17:63094963..63102322,8	MCF-7	breast:
4	chr17:63096447..63097264-chr17:63133141..63133975,2	K562	blood:
5	chr17:63050336..63051938-chr17:63095270..63097179,2	K562	blood:
6	chr17:63096537..63097262-chr17:63133022..63134065,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000120063	Chromatin interaction
ENSG00000214174	Chromatin interaction
ENSG00000108370	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11079555	0.86[ASN][1000 genomes]
rs11079556	1.00[ASN][1000 genomes]
rs11871788	0.83[EUR][1000 genomes]
rs12453609	0.82[EUR][1000 genomes]
rs1808918	0.83[CHD][hapmap];0.82[GIH][hapmap]
rs4791236	0.81[EUR][1000 genomes]
rs60529547	0.97[ASN][1000 genomes]
rs6504277	0.82[EUR][1000 genomes]
rs7213122	0.95[ASN][1000 genomes]
rs7215482	0.82[EUR][1000 genomes]
rs7225502	0.82[EUR][1000 genomes]
rs9892587	0.94[ASN][1000 genomes]
rs9903197	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066765	chr17:62649313-63124303	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv575872	chr17:63084995-63111452	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv112229	chr17:63095123-63104894	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63095400-63097200	Enhancers	Small Intestine	intestine
2	chr17:63095800-63097200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr17:63096200-63097200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr17:63096200-63097200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
5	chr17:63096200-63097400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr17:63096200-63097400	Enhancers	Primary hematopoietic stem cells	blood
7	chr17:63096200-63097400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
8	chr17:63096200-63097400	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr17:63096200-63097400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr17:63096200-63097400	Active TSS	Pancreatic Islets	Pancreatic Islet
11	chr17:63096200-63097400	Flanking Active TSS	HMEC	breast
12	chr17:63096400-63097200	Active TSS	Fetal Stomach	stomach
13	chr17:63096400-63097200	Active TSS	Left Ventricle	heart
14	chr17:63096400-63097200	Active TSS	Right Ventricle	heart
15	chr17:63096400-63097200	Active TSS	Stomach Mucosa	stomach
16	chr17:63096400-63097200	Flanking Active TSS	Thymus	Thymus
17	chr17:63096400-63097200	Flanking Active TSS	Dnd41	blood
18	chr17:63096400-63097200	Active TSS	HSMMtube	muscle
19	chr17:63096400-63097400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
20	chr17:63096400-63097400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr17:63096400-63097400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr17:63096400-63097400	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr17:63096400-63097400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr17:63096400-63097400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
25	chr17:63096400-63097400	Active TSS	Aorta	Aorta
26	chr17:63096400-63097400	Active TSS	Fetal Kidney	kidney
27	chr17:63096400-63097400	Active TSS	Psoas Muscle	Psoas
28	chr17:63096400-63097600	Active TSS	H9 Cell Line	embryonic stem cell
29	chr17:63096400-63097600	Active TSS	HUES64 Cell Line	embryonic stem cell
30	chr17:63096400-63097600	Active TSS	iPS-18 Cell Line	embryonic stem cell
31	chr17:63096400-63097600	Active TSS	iPS-20b Cell Line	embryonic stem cell
32	chr17:63096400-63097600	Active TSS	Right Atrium	heart
33	chr17:63096400-63097800	Active TSS	Brain Cingulate Gyrus	brain
34	chr17:63096600-63097200	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr17:63096600-63097200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr17:63096600-63097200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
37	chr17:63096600-63097200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr17:63096600-63097200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr17:63096600-63097200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr17:63096600-63097200	Active TSS	Brain Anterior Caudate	brain
41	chr17:63096600-63097200	Active TSS	Brain Germinal Matrix	brain
42	chr17:63096600-63097200	Active TSS	Brain Substantia Nigra	brain
43	chr17:63096600-63097200	Active TSS	Fetal Brain Female	brain
44	chr17:63096600-63097200	Active TSS	Fetal Intestine Large	intestine
45	chr17:63096600-63097200	Active TSS	Fetal Lung	lung
46	chr17:63096600-63097200	Active TSS	Gastric	stomach
47	chr17:63096600-63097200	Active TSS	Rectal Mucosa Donor 29	rectum
48	chr17:63096600-63097200	Active TSS	GM12878-XiMat	blood
49	chr17:63096600-63097200	Active TSS	NHDF-Ad	bronchial
50	chr17:63096600-63097200	Active TSS	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links