Variant report

Variant	rs9892587
Chromosome Location	chr17:63097572-63097573
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:63051381..63054935-chr17:63092846..63100708,11	MCF-7	breast:
2	chr17:63097236..63098868-chr17:63102813..63104467,2	MCF-7	breast:
3	chr17:62969521..62973434-chr17:63095329..63098484,3	MCF-7	breast:
4	chr17:63051785..63054961-chr17:63094963..63102322,8	MCF-7	breast:
5	chr17:63097331..63099925-chr17:63102764..63104387,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000214174	Chromatin interaction
ENSG00000120063	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11079555	0.81[ASN][1000 genomes]
rs11079556	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12450227	0.89[EUR][1000 genomes]
rs12450951	0.82[EUR][1000 genomes]
rs12453373	0.82[EUR][1000 genomes]
rs4790961	0.94[ASN][1000 genomes]
rs60529547	0.92[ASN][1000 genomes]
rs62062507	0.83[EUR][1000 genomes]
rs7213122	0.89[ASN][1000 genomes]
rs9903197	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066765	chr17:62649313-63124303	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv575872	chr17:63084995-63111452	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv112229	chr17:63095123-63104894	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63096400-63097600	Active TSS	H9 Cell Line	embryonic stem cell
2	chr17:63096400-63097600	Active TSS	HUES64 Cell Line	embryonic stem cell
3	chr17:63096400-63097600	Active TSS	iPS-18 Cell Line	embryonic stem cell
4	chr17:63096400-63097600	Active TSS	iPS-20b Cell Line	embryonic stem cell
5	chr17:63096400-63097600	Active TSS	Right Atrium	heart
6	chr17:63096400-63097800	Active TSS	Brain Cingulate Gyrus	brain
7	chr17:63096600-63097600	Active TSS	HUES48 Cell Line	embryonic stem cell
8	chr17:63096600-63097600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr17:63096600-63097600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr17:63096600-63097600	Active TSS	Colon Smooth Muscle	Colon
11	chr17:63096600-63097600	Active TSS	K562	blood
12	chr17:63097000-63097600	Flanking Active TSS	H1 Cell Line	embryonic stem cell
13	chr17:63097000-63097600	Flanking Active TSS	Brain Angular Gyrus	brain
14	chr17:63097000-63097600	Flanking Active TSS	Duodenum Mucosa	Duodenum
15	chr17:63097000-63097600	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
16	chr17:63097000-63097600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
17	chr17:63097000-63097600	Flanking Active TSS	Hela-S3	cervix
18	chr17:63097000-63097800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
19	chr17:63097000-63097800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr17:63097000-63097800	Flanking Active TSS	Adipose Nuclei	Adipose
21	chr17:63097000-63097800	Flanking Active TSS	Pancreas	Pancrea
22	chr17:63097000-63097800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
23	chr17:63097000-63097800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
24	chr17:63097000-63097800	Flanking Active TSS	Stomach Smooth Muscle	stomach
25	chr17:63097000-63097800	Flanking Active TSS	A549	lung
26	chr17:63097000-63097800	Flanking Bivalent TSS/Enh	HepG2	liver
27	chr17:63097000-63102400	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr17:63097200-63097600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr17:63097200-63097600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr17:63097200-63097600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr17:63097200-63097600	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
32	chr17:63097200-63097600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
33	chr17:63097200-63097600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr17:63097200-63097600	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
35	chr17:63097200-63097600	Flanking Active TSS	Brain Substantia Nigra	brain
36	chr17:63097200-63097600	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
37	chr17:63097200-63097600	Flanking Active TSS	Fetal Stomach	stomach
38	chr17:63097200-63097600	Enhancers	Placenta Amnion	Placenta Amnion
39	chr17:63097200-63097600	Flanking Active TSS	Stomach Mucosa	stomach
40	chr17:63097200-63097600	Flanking Active TSS	GM12878-XiMat	blood
41	chr17:63097200-63097600	Flanking Active TSS	NHDF-Ad	bronchial
42	chr17:63097200-63097800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr17:63097200-63097800	Flanking Active TSS	Brain Anterior Caudate	brain
44	chr17:63097200-63097800	Flanking Active TSS	Fetal Lung	lung
45	chr17:63097200-63097800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
46	chr17:63097200-63097800	Enhancers	Thymus	Thymus
47	chr17:63097200-63097800	Flanking Active TSS	NHEK	skin
48	chr17:63097200-63101000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr17:63097400-63097600	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
50	chr17:63097400-63097600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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