Variant report

Variant	rs4791112
Chromosome Location	chr17:63912022-63912023
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:63911191..63913826-chr17:63916396..63918800,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs60196012	1.00[EUR][1000 genomes]
rs8071892	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1060940	chr17:63559234-64433942	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv543406	chr17:63559234-64433942	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv932016	chr17:63718991-63963188	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv833519	chr17:63764968-63929177	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv949525	chr17:63869115-64172189	Genic enhancers Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv523470	chr17:63890056-64148359	Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv3487153	chr17:63909539-63940099	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv3487154	chr17:63909539-63940099	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63882000-63913800	Weak transcription	Aorta	Aorta
2	chr17:63884400-63913800	Weak transcription	Left Ventricle	heart
3	chr17:63899400-63913000	Weak transcription	Pancreas	Pancrea
4	chr17:63903200-63927600	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr17:63904800-63938000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr17:63907200-63915000	Weak transcription	Ovary	ovary
7	chr17:63907200-63921600	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr17:63908600-63914800	Weak transcription	Fetal Muscle Leg	muscle
9	chr17:63908600-63915800	Weak transcription	Spleen	Spleen
10	chr17:63908600-63933600	Weak transcription	Psoas Muscle	Psoas
11	chr17:63909000-63926600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr17:63909400-63913800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr17:63909600-63922600	Weak transcription	Fetal Stomach	stomach
14	chr17:63910000-63913800	Weak transcription	Gastric	stomach
15	chr17:63910000-63914600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr17:63910000-63927800	Weak transcription	Lung	lung
17	chr17:63910200-63914600	Weak transcription	Brain Substantia Nigra	brain
18	chr17:63911000-63914400	Weak transcription	HSMM	muscle
19	chr17:63911000-63914600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr17:63911400-63914400	Weak transcription	HUVEC	blood vessel
21	chr17:63911400-63921400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr17:63911400-63925800	Weak transcription	HSMMtube	muscle
23	chr17:63912000-63927800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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