Variant report

Variant	rs8071892
Chromosome Location	chr17:63784585-63784586
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10512506	0.94[YRI][hapmap]
rs4791112	1.00[EUR][1000 genomes]
rs60196012	1.00[EUR][1000 genomes]
rs73348172	1.00[EUR][1000 genomes]
rs9908471	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1060940	chr17:63559234-64433942	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv543406	chr17:63559234-64433942	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv932016	chr17:63718991-63963188	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1059968	chr17:63719016-63852361	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv833519	chr17:63764968-63929177	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63781800-63786400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr17:63781800-63797000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr17:63782000-63793800	Weak transcription	Fetal Heart	heart
4	chr17:63782200-63786200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr17:63782200-63786200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr17:63782200-63788000	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr17:63782800-63798600	Weak transcription	HSMM	muscle
8	chr17:63783600-63795400	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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