Variant report

Variant	rs479312
Chromosome Location	chr1:190777292-190777293
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:190774136..190776489-chr1:190776681..190778449,2	MCF-7	breast:
2	chr1:190776493..190778547-chr1:190781129..190783467,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12063813	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12065838	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12071814	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12085376	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16832838	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs482039	1.00[ASN][1000 genomes]
rs510002	0.94[ASN][1000 genomes]
rs514248	1.00[ASN][1000 genomes]
rs526611	0.88[ASN][1000 genomes]
rs551500	1.00[ASN][1000 genomes]
rs556834	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs558602	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs563136	1.00[ASN][1000 genomes]
rs580764	1.00[ASN][1000 genomes]
rs60612018	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs640866	1.00[ASN][1000 genomes]
rs646098	1.00[ASN][1000 genomes]
rs658733	1.00[ASN][1000 genomes]
rs6691752	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs673818	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs684714	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932040	chr1:190005334-190914580	Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1001216	chr1:190548529-191070623	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv427874	chr1:190581339-190867945	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv997479	chr1:190609151-191388347	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv872772	chr1:190637116-190794433	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv872773	chr1:190637116-190989756	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv872774	chr1:190651533-190794433	Enhancers ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv466827	chr1:190653512-190813289	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv466839	chr1:190653512-190813289	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv548561	chr1:190653512-190813289	Weak transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv832115	chr1:190714670-190867945	Enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv832126	chr1:190715440-190873998	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv1011043	chr1:190720009-190807350	Weak transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:190777000-190778000	Weak transcription	Fetal Lung	lung

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