Variant report

Variant	rs684714
Chromosome Location	chr1:190724993-190724994
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:190723254..190725425-chr1:190726666..190728340,2	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12063813	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12065838	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12071814	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16832838	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs479312	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs482039	0.88[ASN][1000 genomes]
rs510002	0.82[ASN][1000 genomes]
rs514248	0.88[ASN][1000 genomes]
rs526611	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs551500	0.88[ASN][1000 genomes]
rs556834	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs558602	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs563136	0.88[ASN][1000 genomes]
rs580764	0.88[ASN][1000 genomes]
rs60612018	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs640866	0.88[ASN][1000 genomes]
rs646098	0.88[ASN][1000 genomes]
rs658733	0.88[ASN][1000 genomes]
rs6691752	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs673818	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:31 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932040	chr1:190005334-190914580	Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1001216	chr1:190548529-191070623	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv427874	chr1:190581339-190867945	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv997479	chr1:190609151-191388347	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv872769	chr1:190615637-190769794	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv872770	chr1:190637116-190735457	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv872771	chr1:190637116-190769794	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv872772	chr1:190637116-190794433	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv872773	chr1:190637116-190989756	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv872774	chr1:190651533-190794433	Enhancers ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv466794	chr1:190653512-190745969	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv466805	chr1:190653512-190745969	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv466816	chr1:190653512-190745969	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv548560	chr1:190653512-190745969	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv466827	chr1:190653512-190813289	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
16	nsv466839	chr1:190653512-190813289	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
17	nsv548561	chr1:190653512-190813289	Weak transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
18	nsv872779	chr1:190655320-190735457	Weak transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
19	nsv872784	chr1:190658429-190735457	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
20	nsv466894	chr1:190664289-190749781	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
21	nsv548567	chr1:190664289-190749781	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
22	nsv466905	chr1:190664289-190769794	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
23	nsv548568	chr1:190664289-190769794	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
24	nsv548570	chr1:190675536-190747901	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
25	nsv466916	chr1:190675536-190769794	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
26	nsv548571	chr1:190675536-190769794	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
27	nsv548572	chr1:190675536-190773829	ZNF genes & repeats Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
28	nsv872785	chr1:190681824-190744790	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
29	nsv832115	chr1:190714670-190867945	Enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
30	nsv832126	chr1:190715440-190873998	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
31	nsv1011043	chr1:190720009-190807350	Weak transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:190724400-190725000	Enhancers	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links