Variant report

Variant	rs4795088
Chromosome Location	chr17:34113210-34113211
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:34105148..34107060-chr17:34111903..34113544,2	K562	blood:
2	chr17:34112301..34113855-chr17:34126059..34127823,2	K562	blood:

Variant related genes	Relation type
ENSG00000129270	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs4251702	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4795089	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4795092	0.82[AMR][1000 genomes]
rs4796107	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4796108	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4796109	0.80[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4795088	TAF15	Cis_1M	lymphoblastoid	RTeQTL
rs4795088	RDM1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:34092400-34114200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr17:34102600-34113400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr17:34106000-34121400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr17:34106400-34115800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr17:34107000-34114000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr17:34108000-34116400	Enhancers	Stomach Mucosa	stomach
7	chr17:34110200-34116800	Enhancers	Colon Smooth Muscle	Colon
8	chr17:34110400-34116400	Enhancers	Duodenum Smooth Muscle	Duodenum
9	chr17:34110600-34115200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr17:34110600-34116400	Enhancers	Duodenum Mucosa	Duodenum
11	chr17:34111000-34114000	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr17:34111000-34115400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr17:34111600-34113800	Weak transcription	Fetal Heart	heart
14	chr17:34111600-34115200	Weak transcription	Brain Substantia Nigra	brain
15	chr17:34111800-34114000	Weak transcription	Placenta	Placenta
16	chr17:34111800-34116000	Weak transcription	Gastric	stomach
17	chr17:34112000-34113800	Weak transcription	NHDF-Ad	bronchial
18	chr17:34112000-34114200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr17:34112000-34115200	Weak transcription	Brain Anterior Caudate	brain
20	chr17:34112000-34115800	Enhancers	HMEC	breast
21	chr17:34112200-34113400	Weak transcription	Adipose Nuclei	Adipose
22	chr17:34112200-34113400	Weak transcription	Fetal Intestine Large	intestine
23	chr17:34112200-34113400	Weak transcription	Fetal Intestine Small	intestine
24	chr17:34112200-34113600	Weak transcription	Colonic Mucosa	Colon
25	chr17:34112200-34113600	Weak transcription	Small Intestine	intestine
26	chr17:34112200-34113800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr17:34112200-34113800	Weak transcription	Fetal Stomach	stomach
28	chr17:34112200-34115200	Weak transcription	HSMMtube	muscle
29	chr17:34112200-34115800	Weak transcription	Aorta	Aorta
30	chr17:34112200-34119000	Weak transcription	Right Ventricle	heart
31	chr17:34112200-34121800	Weak transcription	Pancreas	Pancrea
32	chr17:34112400-34113400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr17:34112400-34113400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr17:34112400-34113400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr17:34112400-34113400	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr17:34112400-34113400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr17:34112400-34113400	Weak transcription	Stomach Smooth Muscle	stomach
38	chr17:34112400-34113400	Weak transcription	A549	lung
39	chr17:34112400-34113400	Weak transcription	NHLF	lung
40	chr17:34112400-34113400	Weak transcription	Osteobl	bone
41	chr17:34112400-34113600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr17:34112400-34113600	Enhancers	Hela-S3	cervix
43	chr17:34112400-34113600	Weak transcription	HSMM	muscle
44	chr17:34112400-34113800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr17:34112400-34114000	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr17:34112400-34114200	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr17:34112400-34114200	Weak transcription	Right Atrium	heart
48	chr17:34112400-34114400	Weak transcription	Lung	lung
49	chr17:34112400-34115000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr17:34112400-34115400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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