Variant report

Variant	rs4251702
Chromosome Location	chr17:34134937-34134938
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr17:34134728-34135103	K562	blood:	n/a	n/a
2	JUND	chr17:34134753-34135074	K562	blood:	n/a	n/a
3	FOS	chr17:34134398-34135081	HUVEC	blood vessel:	n/a	chr17:34134597-34134608
4	EP300	chr17:34134765-34135010	K562	blood:	n/a	n/a
5	HCFC1	chr17:34134341-34137752	Hela-S3	cervix:	n/a	n/a
6	CTCF	chr17:34134902-34138247	A549	lung:	n/a	chr17:34136058-34136071 chr17:34136054-34136070 chr17:34136056-34136066 chr17:34136053-34136071 chr17:34136059-34136068
7	RCOR1	chr17:34134828-34135062	K562	blood:	n/a	n/a
8	ATF1	chr17:34134787-34135085	K562	blood:	n/a	n/a
9	TBL1XR1	chr17:34134845-34134937	K562	blood:	n/a	n/a
10	MAZ	chr17:34134059-34137565	IMR90	lung:	n/a	n/a
11	SREBP1	chr17:34134666-34137123	GM12878	blood:	n/a	n/a
12	NR2F2	chr17:34134750-34135025	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr17:34134673..34137724-chr17:34141957..34146258,6	MCF-7	breast:
2	chr17:33987664..33989380-chr17:34132554..34135013,3	K562	blood:
3	chr17:33913630..33915202-chr17:34134873..34137603,2	K562	blood:
4	chr17:33913527..33915363-chr17:34134013..34136643,3	MCF-7	breast:
5	chr17:34101120..34102648-chr17:34132276..34135170,2	MCF-7	breast:
6	chr17:33892195..33894200-chr17:34134782..34137507,2	K562	blood:

Variant related genes	Relation type
TAF15	TF binding region
ENSG00000242660	Chromatin interaction
ENSG00000267347	Chromatin interaction
ENSG00000006125	Chromatin interaction

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs11650409	0.87[CEU][hapmap];0.81[CHB][hapmap];0.88[GIH][hapmap];0.95[TSI][hapmap]
rs11652192	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11652536	1.00[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap];0.81[EUR][1000 genomes]
rs11653051	0.87[CEU][hapmap];0.81[CHB][hapmap];0.88[GIH][hapmap];0.95[TSI][hapmap]
rs11653204	0.81[EUR][1000 genomes]
rs11653282	0.87[CEU][hapmap];0.95[TSI][hapmap]
rs11655533	0.87[CEU][hapmap];0.81[CHB][hapmap];0.88[GIH][hapmap];0.95[TSI][hapmap]
rs11656556	0.81[EUR][1000 genomes]
rs11657908	0.87[CEU][hapmap];0.81[CHB][hapmap];0.88[GIH][hapmap];0.95[TSI][hapmap]
rs11658222	0.94[EUR][1000 genomes]
rs11868785	0.88[CEU][hapmap];0.95[TSI][hapmap];0.85[EUR][1000 genomes]
rs11868801	0.81[EUR][1000 genomes]
rs2014839	0.92[EUR][1000 genomes]
rs2107540	0.81[EUR][1000 genomes]
rs2280789	0.88[CEU][hapmap];0.81[TSI][hapmap]
rs2306630	0.88[CEU][hapmap];0.90[TSI][hapmap]
rs28550999	0.81[EUR][1000 genomes]
rs28739295	0.81[EUR][1000 genomes]
rs3760326	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3785764	1.00[CEU][hapmap];0.80[MKK][hapmap];0.82[TSI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3809769	1.00[CEU][hapmap];0.81[CHB][hapmap];0.88[GIH][hapmap];0.81[JPT][hapmap];0.90[TSI][hapmap];0.81[EUR][1000 genomes]
rs3817655	0.88[CEU][hapmap];0.85[TSI][hapmap]
rs3817656	0.84[EUR][1000 genomes]
rs3826404	0.82[MEX][hapmap]
rs4251719	0.88[CEU][hapmap];0.95[TSI][hapmap];0.85[EUR][1000 genomes]
rs4251727	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4251729	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4251737	0.85[EUR][1000 genomes]
rs4251751	1.00[CEU][hapmap];0.81[JPT][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4251752	1.00[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4251769	0.88[CEU][hapmap];0.95[TSI][hapmap]
rs4251788	0.86[EUR][1000 genomes]
rs4795088	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4795089	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4795091	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4795092	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4795095	1.00[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap];0.84[EUR][1000 genomes]
rs4795096	0.88[CEU][hapmap];0.81[TSI][hapmap]
rs4796107	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes]
rs4796108	1.00[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4796109	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4796112	1.00[CEU][hapmap];0.81[CHB][hapmap];0.88[GIH][hapmap];0.81[JPT][hapmap];0.95[TSI][hapmap];0.92[EUR][1000 genomes]
rs4796113	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4796114	0.88[CEU][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4796115	1.00[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4796118	0.80[CHB][hapmap];0.88[GIH][hapmap];0.81[JPT][hapmap];0.90[TSI][hapmap];0.86[EUR][1000 genomes]
rs4796119	1.00[CEU][hapmap];0.81[CHB][hapmap];0.88[MEX][hapmap];0.89[MKK][hapmap];0.90[TSI][hapmap];0.84[EUR][1000 genomes]
rs4796120	1.00[CEU][hapmap];0.81[CHB][hapmap];0.88[GIH][hapmap];0.81[JPT][hapmap];0.88[MEX][hapmap];0.90[TSI][hapmap];0.81[EUR][1000 genomes]
rs4796123	0.88[CEU][hapmap];0.81[CHB][hapmap];0.94[GIH][hapmap];0.81[TSI][hapmap]
rs4796124	0.81[EUR][1000 genomes]
rs4796125	0.81[EUR][1000 genomes]
rs4796127	0.81[EUR][1000 genomes]
rs4796129	0.83[EUR][1000 genomes]
rs4796130	0.81[EUR][1000 genomes]
rs4796131	0.81[EUR][1000 genomes]
rs56294660	0.81[EUR][1000 genomes]
rs56344830	0.82[EUR][1000 genomes]
rs59247105	0.84[EUR][1000 genomes]
rs9303691	1.00[CEU][hapmap];0.81[CHB][hapmap];0.94[GIH][hapmap];0.81[JPT][hapmap];0.90[TSI][hapmap];0.84[EUR][1000 genomes]
rs9303692	0.88[CEU][hapmap];0.90[TSI][hapmap]
rs9789051	0.81[EUR][1000 genomes]
rs9889274	0.95[TSI][hapmap]
rs9889874	0.88[CEU][hapmap];0.90[TSI][hapmap]
rs9894083	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9898132	1.00[CEU][hapmap];0.81[CHB][hapmap];0.88[GIH][hapmap];0.81[JPT][hapmap];0.88[MEX][hapmap];0.90[TSI][hapmap];0.82[EUR][1000 genomes]
rs9898152	1.00[CEU][hapmap];0.81[CHB][hapmap];0.88[GIH][hapmap];0.81[JPT][hapmap];0.90[TSI][hapmap];0.84[EUR][1000 genomes]
rs9899866	0.87[CEU][hapmap];0.81[CHB][hapmap];0.88[GIH][hapmap];0.88[MEX][hapmap];0.95[TSI][hapmap]
rs9899870	0.87[CEU][hapmap];0.81[CHB][hapmap]
rs9900236	0.87[CEU][hapmap];0.81[CHB][hapmap];0.88[GIH][hapmap];0.95[TSI][hapmap]
rs9900473	0.85[EUR][1000 genomes]
rs9903590	0.81[EUR][1000 genomes]
rs9904675	0.87[CEU][hapmap];0.88[GIH][hapmap];0.95[TSI][hapmap]
rs9907121	0.86[EUR][1000 genomes]
rs9907295	0.87[CEU][hapmap];0.81[CHB][hapmap];0.88[GIH][hapmap];0.95[TSI][hapmap]
rs9907588	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9908011	0.87[CEU][hapmap];0.81[CHB][hapmap];0.88[GIH][hapmap];0.95[TSI][hapmap]
rs9908907	0.84[EUR][1000 genomes]
rs9909050	1.00[CEU][hapmap];0.81[CHB][hapmap];0.88[GIH][hapmap];0.81[JPT][hapmap];0.88[MEX][hapmap];0.81[TSI][hapmap]
rs9911598	0.94[EUR][1000 genomes]
rs9912284	0.86[CEU][hapmap];0.81[CHB][hapmap]
rs9912552	0.81[EUR][1000 genomes]
rs9912571	0.86[CEU][hapmap];0.81[CHB][hapmap]
rs9912793	0.85[CEU][hapmap]
rs9913488	0.87[CEU][hapmap];0.81[CHB][hapmap];0.88[GIH][hapmap];0.95[TSI][hapmap]
rs9914401	1.00[CEU][hapmap];0.81[CHB][hapmap];0.88[GIH][hapmap];0.81[JPT][hapmap];0.90[TSI][hapmap];0.84[EUR][1000 genomes]

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:34127000-34135400	Weak transcription	Liver	Liver
2	chr17:34127200-34135000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr17:34127600-34135800	Weak transcription	Aorta	Aorta
4	chr17:34128800-34135400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr17:34129000-34135000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr17:34129000-34135200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr17:34129000-34135200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr17:34129000-34135400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr17:34129000-34135400	Weak transcription	Spleen	Spleen
10	chr17:34129000-34135800	Weak transcription	Right Atrium	heart
11	chr17:34129200-34135000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr17:34129200-34135000	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr17:34129200-34135200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr17:34129200-34135200	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr17:34129200-34135200	Weak transcription	Colonic Mucosa	Colon
16	chr17:34129200-34135400	Weak transcription	Primary T cells from cord blood	blood
17	chr17:34129200-34135400	Weak transcription	Adipose Nuclei	Adipose
18	chr17:34129200-34135400	Weak transcription	Brain Anterior Caudate	brain
19	chr17:34129200-34135400	Weak transcription	Brain Substantia Nigra	brain
20	chr17:34129200-34135600	Weak transcription	Brain Germinal Matrix	brain
21	chr17:34129200-34135600	Weak transcription	HSMMtube	muscle
22	chr17:34129200-34135800	Weak transcription	Esophagus	oesophagus
23	chr17:34129400-34135400	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr17:34129400-34135400	Weak transcription	Lung	lung
25	chr17:34132000-34135200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr17:34132000-34135400	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr17:34132200-34135000	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr17:34132200-34135000	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr17:34132200-34135000	Weak transcription	Primary B cells from peripheral blood	blood
30	chr17:34132200-34135000	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr17:34132200-34135000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr17:34132200-34135000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr17:34132200-34135200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr17:34132200-34135200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr17:34132200-34135200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr17:34132200-34135200	Weak transcription	Fetal Muscle Leg	muscle
37	chr17:34132200-34135400	Weak transcription	Fetal Intestine Large	intestine
38	chr17:34132200-34135400	Weak transcription	Stomach Smooth Muscle	stomach
39	chr17:34132200-34135600	Weak transcription	Fetal Heart	heart
40	chr17:34132200-34135600	Weak transcription	Placenta	Placenta
41	chr17:34132400-34135400	Weak transcription	Brain Hippocampus Middle	brain
42	chr17:34132400-34135400	Weak transcription	GM12878-XiMat	blood
43	chr17:34132400-34135600	Weak transcription	Colon Smooth Muscle	Colon
44	chr17:34132400-34135600	Weak transcription	Rectal Smooth Muscle	rectum
45	chr17:34132800-34135200	Enhancers	HepG2	liver
46	chr17:34133200-34135000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr17:34133200-34135600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr17:34133600-34135000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr17:34133600-34135200	Enhancers	Hela-S3	cervix
50	chr17:34133600-34135400	Enhancers	HUVEC	blood vessel

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