Variant report

Variant	rs28550999
Chromosome Location	chr17:34229891-34229892
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:34225195..34227611-chr17:34228200..34231085,2	K562	blood:

Extended variants
information (count: 131 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:131)

rs_ID	r²[population]
rs11080360	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11080361	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11080362	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11650409	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11652192	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11652536	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11653016	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11653051	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11653204	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11653282	0.85[EUR][1000 genomes]
rs11654713	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11655533	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11656556	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11657908	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11658222	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11868244	0.85[EUR][1000 genomes]
rs11868801	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11869976	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16971670	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2014839	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2107540	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2251660	0.90[ASN][1000 genomes]
rs2280787	0.88[ASN][1000 genomes]
rs2280789	0.87[EUR][1000 genomes]
rs2376287	0.90[ASN][1000 genomes]
rs2526327	0.89[ASN][1000 genomes]
rs2526328	0.87[ASN][1000 genomes]
rs2702947	0.86[ASN][1000 genomes]
rs2702948	0.86[ASN][1000 genomes]
rs2735475	0.88[ASN][1000 genomes]
rs28722787	0.90[ASN][1000 genomes]
rs28739295	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28912068	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34369685	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3760326	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3760447	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3785764	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3809769	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3817656	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4251702	0.81[EUR][1000 genomes]
rs4251727	0.86[ASN][1000 genomes]
rs4251729	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4251751	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4251752	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4251788	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4795091	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4795092	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4795095	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4795096	0.87[EUR][1000 genomes]
rs4795097	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4795099	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4795100	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4795101	0.87[ASN][1000 genomes]
rs4796109	0.81[EUR][1000 genomes]
rs4796112	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4796113	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4796114	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4796115	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4796118	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4796119	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4796120	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4796123	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4796124	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4796125	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4796126	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4796127	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4796129	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4796130	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4796131	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4796133	0.88[ASN][1000 genomes]
rs4796134	0.90[ASN][1000 genomes]
rs4796136	0.90[ASN][1000 genomes]
rs4796137	0.90[ASN][1000 genomes]
rs4796138	0.87[ASN][1000 genomes]
rs55950249	0.87[EUR][1000 genomes]
rs56294660	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56344830	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59247105	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59338510	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7213636	0.90[ASN][1000 genomes]
rs9303691	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9303692	0.82[EUR][1000 genomes]
rs9303693	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9754	0.86[ASN][1000 genomes]
rs9789051	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9889274	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9889874	0.85[EUR][1000 genomes]
rs9889977	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9890583	0.85[ASN][1000 genomes]
rs9891064	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9893004	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9894083	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9894314	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9894799	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9896265	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9896658	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9897665	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9898132	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9898152	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9899215	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9899866	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9899870	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9899881	0.89[ASN][1000 genomes]
rs9900236	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9900473	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9900563	0.84[EUR][1000 genomes]
rs9901195	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9901418	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9903590	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9904675	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9907121	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9907145	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9907295	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9907588	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9908011	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9908525	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9908907	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9909050	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9909416	0.82[EUR][1000 genomes]
rs9911016	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9911598	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9912049	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9912284	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9912552	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9912571	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9912793	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9912894	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9913488	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9913559	0.88[ASN][1000 genomes]
rs9914401	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9914468	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs28550999	RDM1	Cis_1M	lymphoblastoid	RTeQTL
rs28550999	TAF15	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:34222400-34230200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
2	chr17:34223000-34230400	Enhancers	Fetal Thymus	thymus
3	chr17:34225000-34230000	Enhancers	Primary T cells from cord blood	blood
4	chr17:34225400-34231200	Enhancers	Placenta	Placenta
5	chr17:34226000-34231000	Enhancers	Primary T cells fromperipheralblood	blood
6	chr17:34227600-34230000	Enhancers	Primary T killer memory cells from peripheral blood	blood
7	chr17:34228000-34230000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr17:34228200-34233600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr17:34228400-34231200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr17:34228600-34231200	Enhancers	Placenta Amnion	Placenta Amnion
11	chr17:34229200-34233200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr17:34229200-34236800	Weak transcription	K562	blood
13	chr17:34229400-34231400	Enhancers	Thymus	Thymus
14	chr17:34229600-34230400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr17:34229600-34230800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr17:34229800-34231200	Enhancers	Fetal Intestine Small	intestine
17	chr17:34229800-34240000	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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