Variant report

Variant	rs4795097
Chromosome Location	chr17:34221908-34221909
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:34216744..34218926-chr17:34220900..34223192,2	MCF-7	breast:

Extended variants
information (count: 91 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs11080360	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11080361	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11080362	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11650409	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11652536	0.83[AFR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11653016	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11653051	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11653204	0.81[AFR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11653282	0.81[EUR][1000 genomes]
rs11654713	0.86[EUR][1000 genomes]
rs11655533	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11656556	0.83[AFR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11657908	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11868244	0.81[EUR][1000 genomes]
rs11868801	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11869976	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16971670	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2107540	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2280789	0.84[EUR][1000 genomes]
rs28550999	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28739295	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28912068	0.93[EUR][1000 genomes]
rs3760326	0.85[EUR][1000 genomes]
rs3760447	0.89[EUR][1000 genomes]
rs3809769	0.83[AFR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3817656	0.87[EUR][1000 genomes]
rs4251788	0.85[EUR][1000 genomes]
rs4795095	0.87[EUR][1000 genomes]
rs4795096	0.84[EUR][1000 genomes]
rs4795099	0.87[EUR][1000 genomes]
rs4795100	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4796115	0.82[EUR][1000 genomes]
rs4796118	0.85[EUR][1000 genomes]
rs4796119	0.87[EUR][1000 genomes]
rs4796120	0.90[EUR][1000 genomes]
rs4796123	0.81[EUR][1000 genomes]
rs4796124	0.83[AFR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4796125	0.81[AFR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4796126	0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4796127	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4796129	0.90[EUR][1000 genomes]
rs4796130	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4796131	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55950249	0.83[EUR][1000 genomes]
rs56294660	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56344830	0.94[EUR][1000 genomes]
rs59247105	0.87[EUR][1000 genomes]
rs59338510	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9303691	0.87[EUR][1000 genomes]
rs9303693	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9789051	0.83[AFR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9889274	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9889874	0.81[EUR][1000 genomes]
rs9889977	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9891064	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9893004	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9894083	0.83[EUR][1000 genomes]
rs9894314	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9894799	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9896265	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9896658	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9897665	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9898132	0.86[EUR][1000 genomes]
rs9898152	0.87[EUR][1000 genomes]
rs9899215	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9899866	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9899870	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9900236	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9900563	0.80[EUR][1000 genomes]
rs9901195	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9901418	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9903590	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9904675	0.90[EUR][1000 genomes]
rs9907121	0.85[EUR][1000 genomes]
rs9907145	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9907295	0.90[EUR][1000 genomes]
rs9907588	0.82[EUR][1000 genomes]
rs9908011	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9908525	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9908907	0.87[EUR][1000 genomes]
rs9909050	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9911016	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9912049	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9912284	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9912552	0.90[EUR][1000 genomes]
rs9912571	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9912793	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9912894	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9913488	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9914401	0.87[EUR][1000 genomes]
rs9914468	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4795097	TAF15	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:34214200-34223000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr17:34217600-34222200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr17:34217600-34223200	Weak transcription	HSMMtube	muscle
4	chr17:34217600-34225000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr17:34217600-34225800	Weak transcription	Fetal Muscle Leg	muscle
6	chr17:34217600-34227600	Weak transcription	NH-A	brain
7	chr17:34218400-34224800	Weak transcription	Dnd41	blood
8	chr17:34218400-34227600	Weak transcription	Fetal Intestine Small	intestine
9	chr17:34219200-34222600	Weak transcription	K562	blood
10	chr17:34219600-34222600	Weak transcription	Primary T cells from cord blood	blood
11	chr17:34219600-34224400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr17:34219600-34225000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr17:34219600-34225000	Weak transcription	NHEK	skin
14	chr17:34219600-34227400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr17:34219800-34222200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr17:34220000-34222400	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr17:34220000-34222400	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr17:34220000-34223000	Weak transcription	Fetal Thymus	thymus
19	chr17:34220000-34223200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr17:34220200-34222200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr17:34220200-34222200	Weak transcription	Osteobl	bone
22	chr17:34220200-34222400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr17:34220200-34222400	Weak transcription	Duodenum Mucosa	Duodenum
24	chr17:34220200-34222600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr17:34220200-34222600	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr17:34220200-34223200	Weak transcription	Thymus	Thymus
27	chr17:34220400-34222400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr17:34221000-34222400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr17:34221000-34222600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr17:34221000-34222600	Weak transcription	GM12878-XiMat	blood
31	chr17:34221200-34222200	Weak transcription	Placenta	Placenta
32	chr17:34221200-34222400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr17:34221400-34222600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr17:34221600-34222000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr17:34221600-34224200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr17:34221800-34222200	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr17:34221800-34222200	Weak transcription	Placenta Amnion	Placenta Amnion

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