Variant report

Variant	rs9893004
Chromosome Location	chr17:34240859-34240860
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HNF4A	chr17:34240635-34240960	HepG2	liver:	n/a	chr17:34240802-34240816
2	HNF4G	chr17:34240603-34240945	HepG2	liver:	n/a	chr17:34240800-34240815 chr17:34240802-34240816

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:34239384..34241409-chr17:34256754..34259638,2	K562	blood:
2	chr17:34239468..34241400-chr17:34243270..34245048,2	K562	blood:
3	chr17:34135830..34137853-chr17:34239642..34242646,3	K562	blood:
4	chr17:34232786..34236982-chr17:34237084..34241613,5	K562	blood:
5	chr17:34233334..34236285-chr17:34238757..34241613,2	K562	blood:
6	chr17:34239342..34240884-chr17:34256754..34259684,2	K562	blood:
7	chr17:34136040..34139030-chr17:34239642..34241890,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RDM1-1	chr17:34239639-34245014	NONHSAT053145

No data

Variant related genes	Relation type
ENSG00000266999	TF binding region
ENSG00000267578	Chromatin interaction
ENSG00000266999	Chromatin interaction
ENSG00000266972	Chromatin interaction
ENSG00000172660	Chromatin interaction
ENSG00000187456	Chromatin interaction

Extended variants
information (count: 128 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:128)

rs_ID	r²[population]
rs11080360	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11080361	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11080362	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11650409	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11652192	0.89[ASN][1000 genomes]
rs11652536	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11653016	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11653051	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11653204	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11653282	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11654713	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11655533	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11656556	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11657908	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11658222	0.86[ASN][1000 genomes]
rs11868244	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11868801	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11869976	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16971670	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2014839	0.89[ASN][1000 genomes]
rs2107540	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2251660	0.90[ASN][1000 genomes]
rs2280787	0.88[ASN][1000 genomes]
rs2280789	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2376287	0.90[ASN][1000 genomes]
rs2526327	0.89[ASN][1000 genomes]
rs2526328	0.87[ASN][1000 genomes]
rs2702947	0.86[ASN][1000 genomes]
rs2702948	0.86[ASN][1000 genomes]
rs2735475	0.88[ASN][1000 genomes]
rs28550999	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28722787	0.90[ASN][1000 genomes]
rs28739295	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28912068	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34369685	0.85[ASN][1000 genomes]
rs3760326	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3760447	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3785764	0.88[ASN][1000 genomes]
rs3809769	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3817656	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4251727	0.86[ASN][1000 genomes]
rs4251729	0.86[ASN][1000 genomes]
rs4251751	0.86[ASN][1000 genomes]
rs4251752	0.86[ASN][1000 genomes]
rs4251788	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4795091	0.90[ASN][1000 genomes]
rs4795092	0.90[ASN][1000 genomes]
rs4795095	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4795096	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4795097	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4795099	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4795100	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4795101	0.87[ASN][1000 genomes]
rs4796112	0.89[ASN][1000 genomes]
rs4796113	0.89[ASN][1000 genomes]
rs4796114	0.89[ASN][1000 genomes]
rs4796115	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4796118	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4796119	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4796120	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4796123	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4796124	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4796125	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4796126	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4796127	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4796129	0.90[EUR][1000 genomes]
rs4796130	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4796131	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4796133	0.88[ASN][1000 genomes]
rs4796134	0.90[ASN][1000 genomes]
rs4796136	0.90[ASN][1000 genomes]
rs4796137	0.90[ASN][1000 genomes]
rs4796138	0.87[ASN][1000 genomes]
rs55950249	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56294660	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56344830	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59247105	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59338510	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7213636	0.90[ASN][1000 genomes]
rs9303691	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9303693	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9754	0.86[ASN][1000 genomes]
rs9789051	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9889274	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9889874	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9889977	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9890583	0.85[ASN][1000 genomes]
rs9891064	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9894083	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9894314	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9894799	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9896265	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9896658	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9897665	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9898132	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9898152	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9899215	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9899866	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9899870	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9899881	0.89[ASN][1000 genomes]
rs9900236	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9900473	0.88[ASN][1000 genomes]
rs9900563	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9901195	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9901418	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9903590	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9904675	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9907121	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9907145	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9907295	0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9907588	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9908011	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9908525	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9908907	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9909050	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9909416	0.81[AMR][1000 genomes]
rs9911016	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9911598	0.86[ASN][1000 genomes]
rs9912049	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9912284	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9912552	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9912571	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9912793	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9912894	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9913488	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9913559	0.88[ASN][1000 genomes]
rs9914401	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9914468	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9893004	TAF15	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:34230000-34245400	Weak transcription	Primary T cells from cord blood	blood
2	chr17:34234600-34244400	Weak transcription	Thymus	Thymus
3	chr17:34234600-34251200	Weak transcription	Fetal Thymus	thymus
4	chr17:34238400-34242400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr17:34239400-34243400	Enhancers	Liver	Liver
6	chr17:34239600-34244200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr17:34239800-34242600	Enhancers	HepG2	liver
8	chr17:34240000-34241200	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr17:34240000-34242000	Enhancers	Primary T cells fromperipheralblood	blood
10	chr17:34240200-34244200	Enhancers	Fetal Intestine Small	intestine
11	chr17:34240200-34245600	Enhancers	K562	blood
12	chr17:34240600-34241400	Enhancers	Small Intestine	intestine
13	chr17:34240600-34244000	Enhancers	Fetal Intestine Large	intestine

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