Variant report

Variant	rs4796129
Chromosome Location	chr17:34228945-34228946
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:34217739..34219861-chr17:34227155..34229035,2	MCF-7	breast:
2	chr17:34225195..34227611-chr17:34228200..34231085,2	K562	blood:

Extended variants
information (count: 110 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:110)

rs_ID	r²[population]
rs11080360	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11080361	0.90[EUR][1000 genomes]
rs11080362	0.90[EUR][1000 genomes]
rs11650409	0.90[EUR][1000 genomes]
rs11652192	0.86[EUR][1000 genomes]
rs11652536	0.94[EUR][1000 genomes]
rs11653016	0.90[EUR][1000 genomes]
rs11653051	0.90[EUR][1000 genomes]
rs11653204	0.94[EUR][1000 genomes]
rs11653282	0.80[EUR][1000 genomes]
rs11654713	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11655533	0.90[EUR][1000 genomes]
rs11656556	0.94[EUR][1000 genomes]
rs11657908	0.90[EUR][1000 genomes]
rs11658222	0.84[EUR][1000 genomes]
rs11868244	0.80[EUR][1000 genomes]
rs11868801	0.94[EUR][1000 genomes]
rs11869976	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16971670	0.90[EUR][1000 genomes]
rs2014839	0.86[EUR][1000 genomes]
rs2107540	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2280789	0.82[EUR][1000 genomes]
rs28550999	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28739295	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28912068	0.92[EUR][1000 genomes]
rs3760326	0.89[EUR][1000 genomes]
rs3760447	0.88[EUR][1000 genomes]
rs3785764	0.86[EUR][1000 genomes]
rs3809769	0.94[EUR][1000 genomes]
rs3817656	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4251702	0.83[EUR][1000 genomes]
rs4251727	0.80[EUR][1000 genomes]
rs4251729	0.84[EUR][1000 genomes]
rs4251751	0.84[EUR][1000 genomes]
rs4251752	0.84[EUR][1000 genomes]
rs4251788	0.89[EUR][1000 genomes]
rs4795091	0.84[EUR][1000 genomes]
rs4795092	0.84[EUR][1000 genomes]
rs4795095	0.92[EUR][1000 genomes]
rs4795096	0.82[EUR][1000 genomes]
rs4795097	0.90[EUR][1000 genomes]
rs4795099	0.89[EUR][1000 genomes]
rs4795100	0.90[EUR][1000 genomes]
rs4796109	0.84[EUR][1000 genomes]
rs4796112	0.86[EUR][1000 genomes]
rs4796113	0.86[EUR][1000 genomes]
rs4796114	0.83[EUR][1000 genomes]
rs4796115	0.86[EUR][1000 genomes]
rs4796118	0.89[EUR][1000 genomes]
rs4796119	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4796120	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4796123	0.85[EUR][1000 genomes]
rs4796124	0.94[EUR][1000 genomes]
rs4796125	0.94[EUR][1000 genomes]
rs4796126	0.93[EUR][1000 genomes]
rs4796127	0.94[EUR][1000 genomes]
rs4796130	0.94[EUR][1000 genomes]
rs4796131	0.94[EUR][1000 genomes]
rs55950249	0.85[EUR][1000 genomes]
rs56294660	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56344830	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59247105	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs59338510	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9303691	0.92[EUR][1000 genomes]
rs9303692	0.82[EUR][1000 genomes]
rs9303693	0.90[EUR][1000 genomes]
rs9789051	0.94[EUR][1000 genomes]
rs9889274	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9889874	0.85[EUR][1000 genomes]
rs9889977	0.90[EUR][1000 genomes]
rs9891064	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9893004	0.90[EUR][1000 genomes]
rs9894083	0.87[EUR][1000 genomes]
rs9894314	0.90[EUR][1000 genomes]
rs9894799	0.90[EUR][1000 genomes]
rs9896265	0.90[EUR][1000 genomes]
rs9896658	0.90[EUR][1000 genomes]
rs9897665	0.90[EUR][1000 genomes]
rs9898132	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9898152	0.92[EUR][1000 genomes]
rs9899215	0.90[EUR][1000 genomes]
rs9899866	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9899870	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9900236	0.90[EUR][1000 genomes]
rs9900473	0.83[EUR][1000 genomes]
rs9900563	0.81[EUR][1000 genomes]
rs9901195	0.90[EUR][1000 genomes]
rs9901418	0.90[EUR][1000 genomes]
rs9903590	0.89[EUR][1000 genomes]
rs9904675	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9907121	0.89[EUR][1000 genomes]
rs9907145	0.90[EUR][1000 genomes]
rs9907295	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9907588	0.86[EUR][1000 genomes]
rs9908011	0.90[EUR][1000 genomes]
rs9908525	0.90[EUR][1000 genomes]
rs9908907	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9909050	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9909416	0.82[EUR][1000 genomes]
rs9911016	0.90[EUR][1000 genomes]
rs9911598	0.84[EUR][1000 genomes]
rs9912049	0.90[EUR][1000 genomes]
rs9912284	0.90[EUR][1000 genomes]
rs9912552	0.94[EUR][1000 genomes]
rs9912571	0.90[EUR][1000 genomes]
rs9912793	0.90[EUR][1000 genomes]
rs9912894	0.90[EUR][1000 genomes]
rs9913488	0.90[EUR][1000 genomes]
rs9914401	0.92[EUR][1000 genomes]
rs9914468	0.90[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4796129	RDM1	Cis_1M	lymphoblastoid	RTeQTL
rs4796129	TAF15	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:34222400-34230200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
2	chr17:34223000-34230400	Enhancers	Fetal Thymus	thymus
3	chr17:34223400-34229200	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chr17:34225000-34230000	Enhancers	Primary T cells from cord blood	blood
5	chr17:34225400-34231200	Enhancers	Placenta	Placenta
6	chr17:34226000-34231000	Enhancers	Primary T cells fromperipheralblood	blood
7	chr17:34226200-34229400	Weak transcription	Thymus	Thymus
8	chr17:34227200-34229000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr17:34227600-34230000	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr17:34228000-34230000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr17:34228200-34229800	Weak transcription	Fetal Intestine Small	intestine
12	chr17:34228200-34233600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr17:34228400-34229200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr17:34228400-34229600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr17:34228400-34231200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr17:34228600-34229000	Weak transcription	K562	blood
17	chr17:34228600-34231200	Enhancers	Placenta Amnion	Placenta Amnion
18	chr17:34228800-34229600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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