Variant report

Variant	rs9907121
Chromosome Location	chr17:34176078-34176079
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:34142587..34144218-chr17:34175506..34177397,2	K562	blood:
2	chr17:34174331..34176212-chr17:34179934..34181767,2	K562	blood:

Extended variants
information (count: 128 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:128)

rs_ID	r²[population]
rs11080360	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11080361	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11080362	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11650409	0.87[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11652192	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11652536	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11653016	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11653051	0.87[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11653204	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11653282	0.87[CEU][hapmap]
rs11655533	0.87[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11656556	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11657908	0.87[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11658222	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11868785	0.88[CEU][hapmap];0.88[YRI][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11868801	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11869976	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16971670	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2014839	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2107540	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2251660	0.87[CHB][hapmap];0.94[JPT][hapmap]
rs2280787	0.87[CHB][hapmap];0.94[JPT][hapmap]
rs2280789	0.88[CEU][hapmap];0.94[YRI][hapmap];0.85[AFR][1000 genomes]
rs2306630	0.88[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2376287	0.87[CHB][hapmap];0.94[JPT][hapmap]
rs2526327	0.87[CHB][hapmap];0.94[JPT][hapmap]
rs2526328	0.87[CHB][hapmap];0.93[JPT][hapmap]
rs2735475	0.87[CHB][hapmap];0.94[JPT][hapmap]
rs28550999	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28739295	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28912068	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3760326	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3760447	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3785764	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3809769	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3817655	0.88[CEU][hapmap]
rs3817656	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4251702	1.00[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap];0.86[EUR][1000 genomes]
rs4251719	0.88[CEU][hapmap];0.88[YRI][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4251727	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4251729	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4251737	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4251751	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4251752	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4251769	0.88[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4251788	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4795089	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs4795091	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4795092	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4795093	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4795095	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4795096	0.88[CEU][hapmap]
rs4795097	0.85[EUR][1000 genomes]
rs4795099	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4795100	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4795101	0.87[CHB][hapmap];0.94[JPT][hapmap]
rs4796107	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap]
rs4796108	1.00[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap]
rs4796109	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4796112	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4796113	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4796114	0.88[CEU][hapmap];0.92[JPT][hapmap];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4796115	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4796118	0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4796119	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4796120	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4796123	0.88[CEU][hapmap];1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs4796124	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4796125	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4796126	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4796127	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4796129	0.89[EUR][1000 genomes]
rs4796130	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4796131	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4796136	0.87[CHB][hapmap];0.94[JPT][hapmap]
rs4796138	0.87[CHB][hapmap];0.94[JPT][hapmap]
rs56294660	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56344830	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59247105	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59338510	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7213636	0.87[CHB][hapmap];0.94[JPT][hapmap]
rs9303691	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9303692	0.88[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9303693	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9754	0.94[JPT][hapmap]
rs9789051	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9889274	0.93[CHB][hapmap];0.86[JPT][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9889874	0.88[CEU][hapmap];0.88[YRI][hapmap];0.87[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs9889977	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9891064	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9893004	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9894083	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9894314	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9894799	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9896265	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9896658	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9897665	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9898132	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9898152	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9899215	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9899866	0.87[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9899870	0.87[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9900236	0.87[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9900473	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9901195	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9901418	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9903590	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9904675	0.87[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9907145	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9907295	0.87[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9907588	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9908011	0.87[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9908525	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9908907	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9909050	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9909416	0.89[YRI][hapmap];0.90[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs9911016	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9911598	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9912049	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9912284	0.87[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9912552	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9912571	0.87[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9912793	0.85[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9912894	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9913488	0.87[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9913559	0.87[CHB][hapmap];0.94[JPT][hapmap]
rs9914401	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9914468	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9907121	RDM1	Cis_1M	lymphoblastoid	RTeQTL
rs9907121	TAF15	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:34138600-34180800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr17:34138800-34184000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr17:34139200-34184200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr17:34139400-34177600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
5	chr17:34141600-34177400	Strong transcription	HUES64 Cell Line	embryonic stem cell
6	chr17:34142000-34177600	Strong transcription	HUES48 Cell Line	embryonic stem cell
7	chr17:34142400-34177600	Strong transcription	Fetal Thymus	thymus
8	chr17:34142400-34178200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr17:34142600-34177400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
10	chr17:34142600-34180400	Strong transcription	HUES6 Cell Line	embryonic stem cell
11	chr17:34142800-34178600	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr17:34142800-34180800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr17:34142800-34181000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr17:34143000-34177400	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr17:34143000-34177400	Strong transcription	Primary B cells from peripheral blood	blood
16	chr17:34144000-34180000	Strong transcription	HSMM	muscle
17	chr17:34144800-34178600	Strong transcription	Adipose Nuclei	Adipose
18	chr17:34145000-34177600	Strong transcription	Dnd41	blood
19	chr17:34145200-34177400	Strong transcription	Rectal Mucosa Donor 31	rectum
20	chr17:34145800-34176400	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr17:34145800-34176400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr17:34146000-34176400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr17:34146400-34177600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr17:34146600-34176400	Strong transcription	HUVEC	blood vessel
25	chr17:34147800-34177800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr17:34148200-34178800	Strong transcription	Fetal Muscle Trunk	muscle
27	chr17:34152600-34178800	Weak transcription	Fetal Heart	heart
28	chr17:34154400-34176800	Strong transcription	Fetal Brain Female	brain
29	chr17:34156600-34177400	Strong transcription	Primary B cells from cord blood	blood
30	chr17:34158000-34180400	Strong transcription	A549	lung
31	chr17:34158400-34180200	Strong transcription	Cortex derived primary cultured neurospheres	brain
32	chr17:34159200-34177400	Strong transcription	Duodenum Smooth Muscle	Duodenum
33	chr17:34159800-34177400	Strong transcription	Skeletal Muscle Female	skeletal muscle
34	chr17:34160200-34176200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr17:34160600-34177600	Strong transcription	Primary neutrophils fromperipheralblood	blood
36	chr17:34160600-34177800	Strong transcription	Placenta	Placenta
37	chr17:34160800-34180200	Strong transcription	Fetal Muscle Leg	muscle
38	chr17:34161800-34186200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr17:34162000-34178600	Strong transcription	Duodenum Mucosa	Duodenum
40	chr17:34162200-34177400	Strong transcription	Muscle Satellite Cultured Cells	--
41	chr17:34162400-34177400	Strong transcription	Stomach Smooth Muscle	stomach
42	chr17:34163000-34177800	Strong transcription	HMEC	breast
43	chr17:34163800-34176400	Strong transcription	Thymus	Thymus
44	chr17:34163800-34178000	Strong transcription	Left Ventricle	heart
45	chr17:34163800-34184600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr17:34166800-34178800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr17:34167000-34177400	Strong transcription	Primary T cells from cord blood	blood
48	chr17:34167000-34177400	Strong transcription	Primary hematopoietic stem cells	blood
49	chr17:34167200-34177600	Strong transcription	Sigmoid Colon	Sigmoid Colon
50	chr17:34168200-34177400	Strong transcription	Colon Smooth Muscle	Colon

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