Variant report

Variant	rs4795093
Chromosome Location	chr17:34180141-34180142
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:34176668..34179154-chr17:34179979..34183243,5	K562	blood:
2	chr17:34174331..34176212-chr17:34179934..34181767,2	K562	blood:

Extended variants
information (count: 66 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs11650668	0.87[ASN][1000 genomes]
rs11652192	0.85[EUR][1000 genomes]
rs11653282	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11658222	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11868244	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11868785	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2014839	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2107538	0.88[ASN][1000 genomes]
rs2280789	0.89[AFR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2291299	0.92[ASN][1000 genomes]
rs2306630	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28595279	0.91[ASN][1000 genomes]
rs3760326	0.90[EUR][1000 genomes]
rs3760327	0.95[ASN][1000 genomes]
rs3785764	0.85[EUR][1000 genomes]
rs3817655	0.91[ASN][1000 genomes]
rs3817656	0.87[EUR][1000 genomes]
rs4079183	0.95[ASN][1000 genomes]
rs4251719	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4251729	0.82[EUR][1000 genomes]
rs4251737	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4251749	0.89[ASN][1000 genomes]
rs4251751	0.82[EUR][1000 genomes]
rs4251752	0.82[EUR][1000 genomes]
rs4251769	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4251787	0.95[ASN][1000 genomes]
rs4251788	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4251791	0.91[ASN][1000 genomes]
rs4325615	0.91[ASN][1000 genomes]
rs4795091	0.82[EUR][1000 genomes]
rs4795092	0.82[EUR][1000 genomes]
rs4795095	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4795096	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4796109	0.82[EUR][1000 genomes]
rs4796112	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4796113	0.85[EUR][1000 genomes]
rs4796114	0.82[EUR][1000 genomes]
rs4796115	0.87[EUR][1000 genomes]
rs4796116	0.94[ASN][1000 genomes]
rs4796118	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4796119	0.87[EUR][1000 genomes]
rs4796120	0.85[EUR][1000 genomes]
rs4796123	0.90[EUR][1000 genomes]
rs4796128	0.86[ASN][1000 genomes]
rs55950249	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59247105	0.87[EUR][1000 genomes]
rs7211393	0.88[ASN][1000 genomes]
rs7215845	0.84[ASN][1000 genomes]
rs8069014	0.82[ASN][1000 genomes]
rs8080959	0.87[ASN][1000 genomes]
rs9303691	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9303692	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9889874	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9894083	0.88[EUR][1000 genomes]
rs9898132	0.86[EUR][1000 genomes]
rs9898152	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9900473	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9900563	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9907121	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9907588	0.87[EUR][1000 genomes]
rs9908907	0.87[EUR][1000 genomes]
rs9908928	0.91[ASN][1000 genomes]
rs9909416	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9911598	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9912552	0.85[EUR][1000 genomes]
rs9914401	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4795093	TAF15	Cis_1M	lymphoblastoid	RTeQTL
rs4795093	RDM1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:34138600-34180800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr17:34138800-34184000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr17:34139200-34184200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr17:34142600-34180400	Strong transcription	HUES6 Cell Line	embryonic stem cell
5	chr17:34142800-34180800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr17:34142800-34181000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr17:34158000-34180400	Strong transcription	A549	lung
8	chr17:34158400-34180200	Strong transcription	Cortex derived primary cultured neurospheres	brain
9	chr17:34160800-34180200	Strong transcription	Fetal Muscle Leg	muscle
10	chr17:34161800-34186200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr17:34163800-34184600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr17:34168600-34180400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr17:34170200-34192800	Weak transcription	Small Intestine	intestine
14	chr17:34171400-34181400	Weak transcription	Stomach Mucosa	stomach
15	chr17:34171600-34182400	Weak transcription	Fetal Brain Male	brain
16	chr17:34172200-34183400	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr17:34172200-34184000	Weak transcription	Colonic Mucosa	Colon
18	chr17:34172200-34193600	Weak transcription	Right Ventricle	heart
19	chr17:34172800-34181600	Weak transcription	Esophagus	oesophagus
20	chr17:34172800-34183200	Weak transcription	Pancreas	Pancrea
21	chr17:34172800-34193600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr17:34173600-34182400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr17:34173800-34180400	Strong transcription	Fetal Stomach	stomach
24	chr17:34174400-34184200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr17:34174800-34182400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr17:34175000-34184400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr17:34175200-34180200	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr17:34175200-34182400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr17:34175400-34181800	Weak transcription	Aorta	Aorta
30	chr17:34175400-34185000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr17:34175400-34186000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr17:34175400-34186400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr17:34175400-34192200	Weak transcription	Gastric	stomach
34	chr17:34175600-34181000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr17:34175600-34182400	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr17:34175600-34186200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr17:34175600-34193000	Weak transcription	NH-A	brain
38	chr17:34175600-34193600	Weak transcription	Rectal Smooth Muscle	rectum
39	chr17:34175600-34202400	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr17:34175800-34182600	Weak transcription	Liver	Liver
41	chr17:34175800-34183200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr17:34175800-34187600	Weak transcription	Fetal Lung	lung
43	chr17:34176200-34190000	Weak transcription	Spleen	Spleen
44	chr17:34176400-34185400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr17:34176400-34192600	Weak transcription	Fetal Intestine Small	intestine
46	chr17:34176800-34180600	Weak transcription	HepG2	liver
47	chr17:34176800-34193200	Weak transcription	Fetal Brain Female	brain
48	chr17:34177000-34180600	Strong transcription	ES-I3 Cell Line	embryonic stem cell
49	chr17:34177000-34183400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
50	chr17:34177000-34184000	Weak transcription	Primary T helper cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links