Variant report

Variant	rs9900563
Chromosome Location	chr17:34235037-34235038
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:34232786..34236982-chr17:34237084..34241613,5	K562	blood:
2	chr17:34233334..34236285-chr17:34238757..34241613,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RDM1-1	chr17:34233172-34236953	ENSG00000248695
2	lnc-RDM1-1	chr17:34233172-34238027	ENSG00000266999.1

Variant related genes	Relation type
ENSG00000266999	Chromatin interaction

Extended variants
information (count: 95 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs11080360	0.88[EUR][1000 genomes]
rs11080361	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11080362	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11650409	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11650668	0.82[ASN][1000 genomes]
rs11652536	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11653016	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11653051	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11653204	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11653282	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11654713	0.83[EUR][1000 genomes]
rs11655533	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11656556	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11657908	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11868244	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11868785	0.80[EUR][1000 genomes]
rs11868801	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11869976	0.87[EUR][1000 genomes]
rs16971670	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2107538	0.91[ASN][1000 genomes]
rs2107540	0.84[EUR][1000 genomes]
rs2280789	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2291299	0.87[ASN][1000 genomes]
rs2306630	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28550999	0.84[EUR][1000 genomes]
rs28595279	0.83[ASN][1000 genomes]
rs28739295	0.84[EUR][1000 genomes]
rs28912068	0.82[EUR][1000 genomes]
rs3760327	0.84[ASN][1000 genomes]
rs3809769	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3817655	0.88[ASN][1000 genomes]
rs4079183	0.85[ASN][1000 genomes]
rs4251719	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4251737	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4251749	0.81[ASN][1000 genomes]
rs4251769	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4251787	0.84[ASN][1000 genomes]
rs4325615	0.83[ASN][1000 genomes]
rs4795093	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4795096	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4795097	0.80[EUR][1000 genomes]
rs4795100	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4796116	0.82[ASN][1000 genomes]
rs4796123	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4796124	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4796125	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4796126	0.83[EUR][1000 genomes]
rs4796127	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4796128	0.95[ASN][1000 genomes]
rs4796129	0.81[EUR][1000 genomes]
rs4796130	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4796131	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs55950249	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56294660	0.84[EUR][1000 genomes]
rs56344830	0.85[EUR][1000 genomes]
rs59338510	0.82[EUR][1000 genomes]
rs7211393	0.92[ASN][1000 genomes]
rs7215845	0.91[ASN][1000 genomes]
rs8080959	0.82[ASN][1000 genomes]
rs9303692	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9303693	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9789051	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9889274	0.88[EUR][1000 genomes]
rs9889874	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9889977	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9891064	0.88[EUR][1000 genomes]
rs9893004	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9894314	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9894799	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9896265	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9896658	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9897665	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9899215	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9899866	0.88[EUR][1000 genomes]
rs9899870	0.88[EUR][1000 genomes]
rs9900236	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9901195	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9901418	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9903590	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9904675	0.87[EUR][1000 genomes]
rs9907145	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9907295	0.87[EUR][1000 genomes]
rs9908011	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9908525	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9908928	0.85[ASN][1000 genomes]
rs9909050	0.82[EUR][1000 genomes]
rs9909416	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9911016	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9912049	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9912284	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9912571	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9912793	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9912894	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9913488	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9914468	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9900563	TAF15	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:34229200-34236800	Weak transcription	K562	blood
2	chr17:34229800-34240000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr17:34230000-34245400	Weak transcription	Primary T cells from cord blood	blood
4	chr17:34233200-34235200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr17:34233400-34235200	Enhancers	Placenta Amnion	Placenta Amnion
6	chr17:34234000-34236600	Weak transcription	Fetal Intestine Small	intestine
7	chr17:34234200-34240000	Weak transcription	Fetal Intestine Large	intestine
8	chr17:34234600-34237000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr17:34234600-34240000	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr17:34234600-34244400	Weak transcription	Thymus	Thymus
11	chr17:34234600-34251200	Weak transcription	Fetal Thymus	thymus

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