Variant report

Variant	rs4079183
Chromosome Location	chr17:34158191-34158192
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr17:34157987-34158247	MCF10A-Er-Src	breast:	n/a	n/a
2	FOS	chr17:34157984-34158289	MCF10A-Er-Src	breast:	n/a	n/a
3	FOS	chr17:34158021-34158201	MCF10A-Er-Src	breast:	n/a	n/a
4	FOS	chr17:34157988-34158295	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:34142394..34144364-chr17:34157313..34159242,2	K562	blood:

Variant related genes	Relation type
TAF15	TF binding region
ENSG00000267025	TF binding region

Extended variants
information (count: 40 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11650668	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11653282	0.85[ASN][1000 genomes]
rs11868244	0.85[ASN][1000 genomes]
rs11868785	0.83[AMR][1000 genomes]
rs2107538	0.90[AFR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2280789	0.88[ASN][1000 genomes]
rs2291299	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2306630	0.95[ASN][1000 genomes]
rs28595279	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3760327	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3817655	0.93[AFR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4239252	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4251703	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4251710	0.81[AFR][1000 genomes]
rs4251719	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4251724	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4251737	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4251749	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4251769	0.95[ASN][1000 genomes]
rs4251787	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4251791	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4325615	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4795090	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4795093	0.95[ASN][1000 genomes]
rs4795096	0.87[ASN][1000 genomes]
rs4796116	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4796128	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55950249	0.83[ASN][1000 genomes]
rs6505496	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6505498	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7211393	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7215845	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8066406	0.80[EUR][1000 genomes]
rs8069014	0.94[AFR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8080959	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9303692	0.92[ASN][1000 genomes]
rs9889874	0.91[ASN][1000 genomes]
rs9900563	0.85[ASN][1000 genomes]
rs9908928	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9909416	0.91[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4079183	TAF15	Cis_1M	lymphoblastoid	RTeQTL
rs4079183	RDM1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:34138000-34164200	Weak transcription	Colonic Mucosa	Colon
2	chr17:34138600-34180800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr17:34138800-34184000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr17:34139200-34184200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr17:34139400-34163800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr17:34139400-34163800	Weak transcription	Spleen	Spleen
7	chr17:34139400-34177600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
8	chr17:34141600-34177400	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr17:34141800-34159800	Weak transcription	Aorta	Aorta
10	chr17:34142000-34175800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
11	chr17:34142000-34177600	Strong transcription	HUES48 Cell Line	embryonic stem cell
12	chr17:34142400-34177600	Strong transcription	Fetal Thymus	thymus
13	chr17:34142400-34178200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr17:34142600-34173200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr17:34142600-34175600	Strong transcription	H1 Cell Line	embryonic stem cell
16	chr17:34142600-34177400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
17	chr17:34142600-34180400	Strong transcription	HUES6 Cell Line	embryonic stem cell
18	chr17:34142800-34173200	Strong transcription	Osteobl	bone
19	chr17:34142800-34178600	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr17:34142800-34180800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr17:34142800-34181000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr17:34143000-34174800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr17:34143000-34177400	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr17:34143000-34177400	Strong transcription	Primary B cells from peripheral blood	blood
25	chr17:34143200-34166200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr17:34143400-34173200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr17:34143600-34158800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr17:34143600-34168200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr17:34144000-34175600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr17:34144000-34180000	Strong transcription	HSMM	muscle
31	chr17:34144200-34164200	Weak transcription	Pancreas	Pancrea
32	chr17:34144400-34171000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr17:34144600-34161200	Strong transcription	Duodenum Mucosa	Duodenum
34	chr17:34144800-34175800	Strong transcription	Rectal Mucosa Donor 29	rectum
35	chr17:34144800-34178600	Strong transcription	Adipose Nuclei	Adipose
36	chr17:34145000-34177600	Strong transcription	Dnd41	blood
37	chr17:34145200-34174400	Strong transcription	Liver	Liver
38	chr17:34145200-34174400	Strong transcription	Fetal Intestine Large	intestine
39	chr17:34145200-34177400	Strong transcription	Rectal Mucosa Donor 31	rectum
40	chr17:34145800-34165400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr17:34145800-34175600	Strong transcription	Primary T cells fromperipheralblood	blood
42	chr17:34145800-34176400	Strong transcription	Primary T helper cells fromperipheralblood	blood
43	chr17:34145800-34176400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr17:34146000-34176400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr17:34146400-34177600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr17:34146600-34158200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr17:34146600-34164000	Weak transcription	Pancreatic Islets	Pancreatic Islet
48	chr17:34146600-34176400	Strong transcription	HUVEC	blood vessel
49	chr17:34147000-34175600	Strong transcription	Primary T helper cells PMA-I stimulated	--
50	chr17:34147800-34177800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood

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