Variant report

Variant	rs4251737
Chromosome Location	chr17:34146818-34146819
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs11650409	0.89[GIH][hapmap];0.89[MEX][hapmap];0.90[TSI][hapmap]
rs11650668	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11652192	0.87[EUR][1000 genomes]
rs11652536	0.88[CEU][hapmap]
rs11653051	0.89[GIH][hapmap];0.89[MEX][hapmap];0.90[TSI][hapmap]
rs11653282	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.89[MEX][hapmap];0.90[TSI][hapmap];0.87[ASN][1000 genomes]
rs11655533	0.89[GIH][hapmap];0.89[MEX][hapmap];0.90[TSI][hapmap]
rs11657908	0.89[GIH][hapmap];0.83[MEX][hapmap];0.90[TSI][hapmap]
rs11658222	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11868244	0.87[ASN][1000 genomes]
rs11868785	1.00[ASW][hapmap];1.00[CEU][hapmap];0.85[CHB][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.89[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2014839	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2107538	0.80[CEU][hapmap];0.85[CHB][hapmap];0.94[CHD][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs2280789	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.84[LWK][hapmap];0.89[MEX][hapmap];0.89[MKK][hapmap];0.86[TSI][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2291299	0.80[CEU][hapmap];0.85[CHB][hapmap];0.94[CHD][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs2306630	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];0.89[MEX][hapmap];0.97[MKK][hapmap];0.95[TSI][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28595279	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs3760326	0.82[EUR][1000 genomes]
rs3760327	0.88[ASN][1000 genomes]
rs3785764	1.00[CEU][hapmap];0.87[TSI][hapmap];0.87[EUR][1000 genomes]
rs3809769	0.88[CEU][hapmap];0.89[GIH][hapmap];0.89[MEX][hapmap];0.95[TSI][hapmap]
rs3817655	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.90[TSI][hapmap];0.85[ASN][1000 genomes]
rs4079183	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4251702	0.88[CEU][hapmap];0.95[TSI][hapmap];0.85[EUR][1000 genomes]
rs4251703	0.95[JPT][hapmap]
rs4251719	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.89[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4251724	0.91[JPT][hapmap];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4251727	0.86[EUR][1000 genomes]
rs4251729	0.90[EUR][1000 genomes]
rs4251749	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4251751	0.88[CEU][hapmap];0.90[EUR][1000 genomes]
rs4251752	0.88[CEU][hapmap];0.90[EUR][1000 genomes]
rs4251769	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];0.89[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4251787	0.88[ASN][1000 genomes]
rs4251788	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4251791	0.84[ASN][1000 genomes]
rs4325615	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4795087	0.81[CHB][hapmap]
rs4795089	0.88[CEU][hapmap];0.95[TSI][hapmap]
rs4795090	0.91[JPT][hapmap]
rs4795091	0.90[EUR][1000 genomes]
rs4795092	0.90[EUR][1000 genomes]
rs4795093	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4795095	0.88[CEU][hapmap];0.82[YRI][hapmap]
rs4795096	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.86[TSI][hapmap];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4796107	0.88[CEU][hapmap];0.95[TSI][hapmap]
rs4796108	0.86[CEU][hapmap]
rs4796109	0.90[EUR][1000 genomes]
rs4796112	0.83[ASW][hapmap];0.88[CEU][hapmap];0.89[GIH][hapmap];0.97[LWK][hapmap];0.89[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4796113	0.87[EUR][1000 genomes]
rs4796114	0.85[EUR][1000 genomes]
rs4796115	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs4796116	0.87[ASN][1000 genomes]
rs4796118	0.89[GIH][hapmap];0.80[LWK][hapmap];0.95[TSI][hapmap];0.82[YRI][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4796119	0.87[CEU][hapmap];0.95[TSI][hapmap]
rs4796120	0.88[CEU][hapmap];0.89[GIH][hapmap];0.95[TSI][hapmap]
rs4796123	1.00[CEU][hapmap];0.84[GIH][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes]
rs4796128	0.80[CEU][hapmap];0.90[CHB][hapmap];0.92[CHD][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs55950249	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6505496	0.80[CEU][hapmap];0.91[JPT][hapmap]
rs7211393	0.86[ASN][1000 genomes]
rs7215845	0.82[ASN][1000 genomes]
rs8080959	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9303691	0.83[ASW][hapmap];0.88[CEU][hapmap];0.89[GIH][hapmap];0.93[LWK][hapmap];0.89[MEX][hapmap];0.97[MKK][hapmap];0.95[TSI][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes]
rs9303692	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.93[LWK][hapmap];0.89[MEX][hapmap];0.97[MKK][hapmap];0.95[TSI][hapmap];0.82[YRI][hapmap];0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9889274	0.90[TSI][hapmap]
rs9889874	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.87[LWK][hapmap];0.89[MEX][hapmap];0.91[MKK][hapmap];0.95[TSI][hapmap];0.82[YRI][hapmap];0.84[AFR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9894083	0.84[EUR][1000 genomes]
rs9898132	0.88[CEU][hapmap];0.89[GIH][hapmap];0.95[TSI][hapmap]
rs9898152	0.83[ASW][hapmap];0.88[CEU][hapmap];0.89[GIH][hapmap];0.81[LWK][hapmap];0.89[MEX][hapmap];0.95[TSI][hapmap];0.82[YRI][hapmap]
rs9899866	0.89[GIH][hapmap];0.90[TSI][hapmap]
rs9900236	0.89[GIH][hapmap];0.84[MEX][hapmap];0.90[TSI][hapmap]
rs9900473	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9900563	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9904675	0.89[GIH][hapmap];0.90[TSI][hapmap]
rs9907121	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9907295	0.89[GIH][hapmap];0.90[TSI][hapmap]
rs9907588	0.85[EUR][1000 genomes]
rs9908011	0.89[GIH][hapmap];0.89[MEX][hapmap];0.90[TSI][hapmap]
rs9908928	0.85[ASN][1000 genomes]
rs9909050	0.88[CEU][hapmap];0.89[GIH][hapmap];0.86[TSI][hapmap]
rs9909416	0.85[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap];0.84[AFR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9911598	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9913488	0.89[GIH][hapmap];0.89[MEX][hapmap];0.90[TSI][hapmap]
rs9914401	0.83[ASW][hapmap];0.88[CEU][hapmap];0.89[GIH][hapmap];0.81[LWK][hapmap];0.89[MEX][hapmap];0.95[TSI][hapmap];0.82[YRI][hapmap]

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs4251737	TAF15	Cis_1M	lymphoblastoid	RTeQTL
rs4251737	CCL5	cis	lymphoblastoid	seeQTL
rs4251737	RDM1	cis	lymphoblastoid	seeQTL
rs4251737	RDM1	Cis_1M	lymphoblastoid	RTeQTL
rs4251737	RDM1	cis	multi-tissue	Pritchard
rs4251737	RAD52B	cis	multi-tissue	Pritchard
rs4251737	RDM1	cis	Lymphoblastoid	GTEx

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:34137600-34149200	Weak transcription	Gastric	stomach
2	chr17:34137800-34149200	Weak transcription	Esophagus	oesophagus
3	chr17:34137800-34149800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr17:34137800-34152000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr17:34137800-34154000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr17:34138000-34149600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr17:34138000-34153400	Weak transcription	Right Ventricle	heart
8	chr17:34138000-34164200	Weak transcription	Colonic Mucosa	Colon
9	chr17:34138200-34149400	Weak transcription	HSMMtube	muscle
10	chr17:34138200-34149600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr17:34138200-34151600	Weak transcription	Fetal Heart	heart
12	chr17:34138600-34180800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr17:34138800-34184000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr17:34139200-34184200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr17:34139400-34149400	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr17:34139400-34163800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr17:34139400-34163800	Weak transcription	Spleen	Spleen
18	chr17:34139400-34177600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
19	chr17:34140600-34148400	Weak transcription	Rectal Smooth Muscle	rectum
20	chr17:34140800-34149600	Weak transcription	Fetal Brain Male	brain
21	chr17:34141600-34177400	Strong transcription	HUES64 Cell Line	embryonic stem cell
22	chr17:34141800-34159800	Weak transcription	Aorta	Aorta
23	chr17:34142000-34148000	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr17:34142000-34175800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
25	chr17:34142000-34177600	Strong transcription	HUES48 Cell Line	embryonic stem cell
26	chr17:34142200-34152600	Strong transcription	Primary B cells from cord blood	blood
27	chr17:34142400-34148600	Strong transcription	GM12878-XiMat	blood
28	chr17:34142400-34177600	Strong transcription	Fetal Thymus	thymus
29	chr17:34142400-34178200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr17:34142600-34173200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr17:34142600-34175600	Strong transcription	H1 Cell Line	embryonic stem cell
32	chr17:34142600-34177400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
33	chr17:34142600-34180400	Strong transcription	HUES6 Cell Line	embryonic stem cell
34	chr17:34142800-34147800	Strong transcription	Fetal Muscle Trunk	muscle
35	chr17:34142800-34149600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr17:34142800-34153400	Strong transcription	Placenta	Placenta
37	chr17:34142800-34173200	Strong transcription	Osteobl	bone
38	chr17:34142800-34178600	Strong transcription	Monocytes-CD14+_RO01746	blood
39	chr17:34142800-34180800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr17:34142800-34181000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr17:34143000-34147400	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
42	chr17:34143000-34147400	Strong transcription	Fetal Muscle Leg	muscle
43	chr17:34143000-34152600	Strong transcription	Hela-S3	cervix
44	chr17:34143000-34174800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr17:34143000-34177400	Strong transcription	Primary monocytes fromperipheralblood	blood
46	chr17:34143000-34177400	Strong transcription	Primary B cells from peripheral blood	blood
47	chr17:34143200-34166200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr17:34143400-34173200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr17:34143600-34158800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr17:34143600-34168200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links