Variant report

Variant	rs9911598
Chromosome Location	chr17:34152780-34152781
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:34150995..34153273-chr17:34163056..34165219,2	K562	blood:
2	chr17:34147100..34148609-chr17:34151803..34154663,2	K562	blood:
3	chr17:34142052..34144215-chr17:34150005..34152807,2	K562	blood:
4	chr17:34150848..34153323-chr17:34155042..34156734,2	K562	blood:

Extended variants
information (count: 110 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:110)

rs_ID	r²[population]
rs11080360	0.86[ASN][1000 genomes]
rs11080361	0.86[ASN][1000 genomes]
rs11080362	0.86[ASN][1000 genomes]
rs11650409	0.86[ASN][1000 genomes]
rs11652192	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11652536	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11653016	0.86[ASN][1000 genomes]
rs11653051	0.86[ASN][1000 genomes]
rs11653204	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11655533	0.86[ASN][1000 genomes]
rs11656556	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11657908	0.86[ASN][1000 genomes]
rs11658222	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11868785	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11868801	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11869976	0.86[ASN][1000 genomes]
rs16971670	0.86[ASN][1000 genomes]
rs2014839	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2107540	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2306630	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28550999	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28739295	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28912068	0.88[ASN][1000 genomes]
rs3760326	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3760447	0.88[ASN][1000 genomes]
rs3785764	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3809769	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3817656	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4251702	0.94[EUR][1000 genomes]
rs4251719	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4251727	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4251729	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4251737	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4251751	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4251752	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4251769	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4251788	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4795089	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4795091	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4795092	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4795093	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4795095	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4795099	0.84[ASN][1000 genomes]
rs4795100	0.86[ASN][1000 genomes]
rs4796107	0.80[ASN][1000 genomes]
rs4796108	0.86[EUR][1000 genomes]
rs4796109	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4796112	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4796113	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4796114	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4796115	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4796118	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4796119	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4796120	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4796123	0.86[ASN][1000 genomes]
rs4796124	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4796125	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4796126	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4796127	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4796129	0.84[EUR][1000 genomes]
rs4796130	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4796131	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56294660	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56344830	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59247105	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59338510	0.87[ASN][1000 genomes]
rs9303691	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9303692	0.85[AFR][1000 genomes]
rs9303693	0.86[ASN][1000 genomes]
rs9789051	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9889274	0.86[ASN][1000 genomes]
rs9889874	0.80[AFR][1000 genomes]
rs9889977	0.86[ASN][1000 genomes]
rs9891064	0.86[ASN][1000 genomes]
rs9893004	0.86[ASN][1000 genomes]
rs9894083	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9894314	0.86[ASN][1000 genomes]
rs9894799	0.86[ASN][1000 genomes]
rs9896265	0.85[ASN][1000 genomes]
rs9896658	0.86[ASN][1000 genomes]
rs9897665	0.86[ASN][1000 genomes]
rs9898132	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9898152	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9899215	0.86[ASN][1000 genomes]
rs9899866	0.86[ASN][1000 genomes]
rs9899870	0.86[ASN][1000 genomes]
rs9900236	0.86[ASN][1000 genomes]
rs9900473	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9901195	0.86[ASN][1000 genomes]
rs9901418	0.86[ASN][1000 genomes]
rs9903590	0.86[ASN][1000 genomes]
rs9904675	0.81[ASN][1000 genomes]
rs9907121	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9907145	0.86[ASN][1000 genomes]
rs9907588	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9908011	0.86[ASN][1000 genomes]
rs9908525	0.86[ASN][1000 genomes]
rs9908907	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9909050	0.87[ASN][1000 genomes]
rs9909416	0.82[AFR][1000 genomes]
rs9911016	0.86[ASN][1000 genomes]
rs9912049	0.86[ASN][1000 genomes]
rs9912284	0.86[ASN][1000 genomes]
rs9912552	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9912571	0.86[ASN][1000 genomes]
rs9912793	0.86[ASN][1000 genomes]
rs9912894	0.86[ASN][1000 genomes]
rs9913488	0.86[ASN][1000 genomes]
rs9914401	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9914468	0.86[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9911598	TAF15	Cis_1M	lymphoblastoid	RTeQTL
rs9911598	RDM1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:34137800-34154000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr17:34138000-34153400	Weak transcription	Right Ventricle	heart
3	chr17:34138000-34164200	Weak transcription	Colonic Mucosa	Colon
4	chr17:34138600-34180800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr17:34138800-34184000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr17:34139200-34184200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr17:34139400-34163800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr17:34139400-34163800	Weak transcription	Spleen	Spleen
9	chr17:34139400-34177600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
10	chr17:34141600-34177400	Strong transcription	HUES64 Cell Line	embryonic stem cell
11	chr17:34141800-34159800	Weak transcription	Aorta	Aorta
12	chr17:34142000-34175800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
13	chr17:34142000-34177600	Strong transcription	HUES48 Cell Line	embryonic stem cell
14	chr17:34142400-34177600	Strong transcription	Fetal Thymus	thymus
15	chr17:34142400-34178200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr17:34142600-34173200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr17:34142600-34175600	Strong transcription	H1 Cell Line	embryonic stem cell
18	chr17:34142600-34177400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
19	chr17:34142600-34180400	Strong transcription	HUES6 Cell Line	embryonic stem cell
20	chr17:34142800-34153400	Strong transcription	Placenta	Placenta
21	chr17:34142800-34173200	Strong transcription	Osteobl	bone
22	chr17:34142800-34178600	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr17:34142800-34180800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr17:34142800-34181000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr17:34143000-34174800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr17:34143000-34177400	Strong transcription	Primary monocytes fromperipheralblood	blood
27	chr17:34143000-34177400	Strong transcription	Primary B cells from peripheral blood	blood
28	chr17:34143200-34166200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr17:34143400-34173200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr17:34143600-34158800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr17:34143600-34168200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr17:34144000-34175600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr17:34144000-34180000	Strong transcription	HSMM	muscle
34	chr17:34144200-34153800	Weak transcription	Lung	lung
35	chr17:34144200-34164200	Weak transcription	Pancreas	Pancrea
36	chr17:34144400-34153000	Strong transcription	Primary hematopoietic stem cells	blood
37	chr17:34144400-34153800	Strong transcription	HMEC	breast
38	chr17:34144400-34171000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr17:34144600-34156400	Strong transcription	A549	lung
40	chr17:34144600-34157200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr17:34144600-34158000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr17:34144600-34161200	Strong transcription	Duodenum Mucosa	Duodenum
43	chr17:34144800-34152800	Strong transcription	Brain Anterior Caudate	brain
44	chr17:34144800-34153400	Strong transcription	NHEK	skin
45	chr17:34144800-34175800	Strong transcription	Rectal Mucosa Donor 29	rectum
46	chr17:34144800-34178600	Strong transcription	Adipose Nuclei	Adipose
47	chr17:34145000-34155400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr17:34145000-34157200	Weak transcription	Stomach Mucosa	stomach
49	chr17:34145000-34177600	Strong transcription	Dnd41	blood
50	chr17:34145200-34174400	Strong transcription	Liver	Liver

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