Variant report

Variant	rs4796114
Chromosome Location	chr17:34159657-34159658
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr17:34159013-34159904	PFSK-1	brain:	n/a	n/a
2	POLR2A	chr17:34159109-34160628	K562	blood:	n/a	n/a

Variant related genes	Relation type
TAF15	TF binding region
ENSG00000267025	TF binding region

Extended variants
information (count: 121 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:121)

rs_ID	r²[population]
rs11080360	0.89[ASN][1000 genomes]
rs11080361	0.89[ASN][1000 genomes]
rs11080362	0.89[ASN][1000 genomes]
rs11650409	0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs11652192	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11652536	0.88[CEU][hapmap];0.92[JPT][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11653016	0.89[ASN][1000 genomes]
rs11653051	0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs11653204	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11655533	0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs11656556	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11657908	0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs11658222	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11868785	0.85[EUR][1000 genomes]
rs11868801	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11869976	0.89[ASN][1000 genomes]
rs16971670	0.89[ASN][1000 genomes]
rs2014839	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2107540	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2251660	0.85[JPT][hapmap]
rs2280787	0.85[JPT][hapmap]
rs2306630	0.82[EUR][1000 genomes]
rs2376287	0.85[JPT][hapmap]
rs2526327	0.85[JPT][hapmap]
rs2526328	0.91[JPT][hapmap]
rs2735475	0.85[JPT][hapmap]
rs28550999	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28739295	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28912068	0.91[ASN][1000 genomes]
rs3760326	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3760447	0.91[ASN][1000 genomes]
rs3785764	0.86[CEU][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3809769	0.88[CEU][hapmap];0.92[JPT][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3817656	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4251702	0.88[CEU][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4251719	0.85[EUR][1000 genomes]
rs4251727	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4251729	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4251737	0.85[EUR][1000 genomes]
rs4251751	0.88[CEU][hapmap];0.92[JPT][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4251752	0.88[CEU][hapmap];0.92[JPT][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4251769	0.85[EUR][1000 genomes]
rs4251788	0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4795089	0.88[CEU][hapmap];0.92[JPT][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4795091	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4795092	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4795093	0.82[EUR][1000 genomes]
rs4795095	0.88[CEU][hapmap];0.92[JPT][hapmap];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4795099	0.85[ASN][1000 genomes]
rs4795100	0.89[ASN][1000 genomes]
rs4795101	0.85[JPT][hapmap]
rs4796107	0.88[CEU][hapmap];0.92[JPT][hapmap]
rs4796108	0.86[CEU][hapmap];0.85[JPT][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4796109	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4796112	0.88[CEU][hapmap];0.92[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4796113	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4796115	0.88[CEU][hapmap];0.92[JPT][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4796118	0.92[JPT][hapmap];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4796119	0.86[CEU][hapmap];0.92[JPT][hapmap];1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4796120	0.88[CEU][hapmap];0.92[JPT][hapmap];1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4796123	0.89[ASN][1000 genomes]
rs4796124	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4796125	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4796126	0.88[ASN][1000 genomes]
rs4796127	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4796129	0.83[EUR][1000 genomes]
rs4796130	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4796131	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4796136	0.85[JPT][hapmap]
rs4796138	0.85[JPT][hapmap]
rs56294660	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56344830	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59247105	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59338510	0.90[ASN][1000 genomes]
rs7213636	0.85[JPT][hapmap]
rs9303691	0.88[CEU][hapmap];0.92[JPT][hapmap];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9303693	0.89[ASN][1000 genomes]
rs9754	0.85[JPT][hapmap]
rs9789051	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9889274	0.89[ASN][1000 genomes]
rs9889977	0.89[ASN][1000 genomes]
rs9891064	0.89[ASN][1000 genomes]
rs9893004	0.89[ASN][1000 genomes]
rs9894083	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9894314	0.89[ASN][1000 genomes]
rs9894799	0.89[ASN][1000 genomes]
rs9896265	0.88[ASN][1000 genomes]
rs9896658	0.89[ASN][1000 genomes]
rs9897665	0.89[ASN][1000 genomes]
rs9898132	0.88[CEU][hapmap];0.92[JPT][hapmap];0.87[AFR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9898152	0.88[CEU][hapmap];0.92[JPT][hapmap];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9899215	0.89[ASN][1000 genomes]
rs9899866	0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs9899870	0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs9900236	0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs9900473	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9901195	0.89[ASN][1000 genomes]
rs9901418	0.89[ASN][1000 genomes]
rs9903590	0.89[ASN][1000 genomes]
rs9904675	0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs9907121	0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9907145	0.89[ASN][1000 genomes]
rs9907295	0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs9907588	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9908011	0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs9908525	0.89[ASN][1000 genomes]
rs9908907	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9909050	0.88[CEU][hapmap];0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs9911016	0.89[ASN][1000 genomes]
rs9911598	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9912049	0.89[ASN][1000 genomes]
rs9912284	0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs9912552	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9912571	0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs9912793	0.83[JPT][hapmap];0.89[ASN][1000 genomes]
rs9912894	0.89[ASN][1000 genomes]
rs9913488	0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs9913559	0.85[JPT][hapmap]
rs9914401	0.88[CEU][hapmap];0.92[JPT][hapmap];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9914468	0.89[ASN][1000 genomes]
rs9916368	1.00[YRI][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4796114	TAF15	Cis_1M	lymphoblastoid	RTeQTL
rs4796114	RDM1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:34138000-34164200	Weak transcription	Colonic Mucosa	Colon
2	chr17:34138600-34180800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr17:34138800-34184000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr17:34139200-34184200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr17:34139400-34163800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr17:34139400-34163800	Weak transcription	Spleen	Spleen
7	chr17:34139400-34177600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
8	chr17:34141600-34177400	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr17:34141800-34159800	Weak transcription	Aorta	Aorta
10	chr17:34142000-34175800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
11	chr17:34142000-34177600	Strong transcription	HUES48 Cell Line	embryonic stem cell
12	chr17:34142400-34177600	Strong transcription	Fetal Thymus	thymus
13	chr17:34142400-34178200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr17:34142600-34173200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr17:34142600-34175600	Strong transcription	H1 Cell Line	embryonic stem cell
16	chr17:34142600-34177400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
17	chr17:34142600-34180400	Strong transcription	HUES6 Cell Line	embryonic stem cell
18	chr17:34142800-34173200	Strong transcription	Osteobl	bone
19	chr17:34142800-34178600	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr17:34142800-34180800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr17:34142800-34181000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr17:34143000-34174800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr17:34143000-34177400	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr17:34143000-34177400	Strong transcription	Primary B cells from peripheral blood	blood
25	chr17:34143200-34166200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr17:34143400-34173200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr17:34143600-34168200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr17:34144000-34175600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr17:34144000-34180000	Strong transcription	HSMM	muscle
30	chr17:34144200-34164200	Weak transcription	Pancreas	Pancrea
31	chr17:34144400-34171000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr17:34144600-34161200	Strong transcription	Duodenum Mucosa	Duodenum
33	chr17:34144800-34175800	Strong transcription	Rectal Mucosa Donor 29	rectum
34	chr17:34144800-34178600	Strong transcription	Adipose Nuclei	Adipose
35	chr17:34145000-34177600	Strong transcription	Dnd41	blood
36	chr17:34145200-34174400	Strong transcription	Liver	Liver
37	chr17:34145200-34174400	Strong transcription	Fetal Intestine Large	intestine
38	chr17:34145200-34177400	Strong transcription	Rectal Mucosa Donor 31	rectum
39	chr17:34145800-34165400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr17:34145800-34175600	Strong transcription	Primary T cells fromperipheralblood	blood
41	chr17:34145800-34176400	Strong transcription	Primary T helper cells fromperipheralblood	blood
42	chr17:34145800-34176400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr17:34146000-34176400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr17:34146400-34177600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr17:34146600-34164000	Weak transcription	Pancreatic Islets	Pancreatic Islet
46	chr17:34146600-34176400	Strong transcription	HUVEC	blood vessel
47	chr17:34147000-34175600	Strong transcription	Primary T helper cells PMA-I stimulated	--
48	chr17:34147800-34177800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr17:34148200-34178800	Strong transcription	Fetal Muscle Trunk	muscle
50	chr17:34148400-34165800	Strong transcription	Primary T cells from cord blood	blood

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