Variant report

Variant	rs9912552
Chromosome Location	chr17:34201771-34201772
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:34200979..34203513-chr17:34206991..34209447,2	K562	blood:

Variant related genes	Relation type
ENSG00000161570	Chromatin interaction

Extended variants
information (count: 126 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:126)

rs_ID	r²[population]
rs11080360	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11080361	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11080362	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11650409	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11652192	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11652536	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11653016	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11653051	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11653204	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11653282	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11654713	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11655533	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11656556	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11657908	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11658222	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11868244	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11868801	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11869976	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16971670	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2014839	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2107540	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2251660	0.83[ASN][1000 genomes]
rs2280787	0.81[ASN][1000 genomes]
rs2280789	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2306630	0.85[EUR][1000 genomes]
rs2376287	0.83[ASN][1000 genomes]
rs2526327	0.82[ASN][1000 genomes]
rs2735475	0.81[ASN][1000 genomes]
rs28550999	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28722787	0.83[ASN][1000 genomes]
rs28739295	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28912068	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3760326	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3760447	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3785764	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3809769	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3817656	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4251702	0.81[EUR][1000 genomes]
rs4251727	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4251729	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4251751	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4251752	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4251769	0.82[EUR][1000 genomes]
rs4251788	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4795089	0.83[ASN][1000 genomes]
rs4795091	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4795092	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4795093	0.85[EUR][1000 genomes]
rs4795095	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4795096	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4795097	0.90[EUR][1000 genomes]
rs4795099	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4795100	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4796109	0.86[EUR][1000 genomes]
rs4796112	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4796113	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4796114	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4796115	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4796118	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4796119	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4796120	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4796123	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4796124	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4796125	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4796126	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4796127	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4796129	0.94[EUR][1000 genomes]
rs4796130	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4796131	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4796133	0.81[ASN][1000 genomes]
rs4796134	0.83[ASN][1000 genomes]
rs4796136	0.83[ASN][1000 genomes]
rs4796137	0.83[ASN][1000 genomes]
rs55950249	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56294660	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56344830	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59247105	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59338510	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7213636	0.83[ASN][1000 genomes]
rs9303691	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9303692	0.87[EUR][1000 genomes]
rs9303693	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9789051	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9889274	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9889874	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9889977	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9891064	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9893004	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9894083	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9894314	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9894799	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9896265	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9896658	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9897665	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9898132	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9898152	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9899215	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9899866	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9899870	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9899881	0.82[ASN][1000 genomes]
rs9900236	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9900473	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9901195	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9901418	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9903590	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9904675	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9907121	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9907145	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9907295	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9907588	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9908011	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9908525	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9908907	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9909050	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9909416	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9911016	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9911598	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9912049	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9912284	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9912571	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9912793	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9912894	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9913488	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9913559	0.81[ASN][1000 genomes]
rs9914401	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9914468	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9912552	TAF15	Cis_1M	lymphoblastoid	RTeQTL
rs9912552	RDM1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:34175600-34202400	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr17:34177200-34202400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr17:34179000-34203800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr17:34180800-34202000	Weak transcription	GM12878-XiMat	blood
5	chr17:34185800-34206800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr17:34192200-34218000	Weak transcription	Stomach Smooth Muscle	stomach
7	chr17:34192400-34213200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr17:34194000-34205800	Weak transcription	K562	blood
9	chr17:34197800-34202400	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr17:34198200-34202200	Genic enhancers	Primary T cells fromperipheralblood	blood
11	chr17:34198400-34202400	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr17:34198400-34205400	Weak transcription	Pancreas	Pancrea
13	chr17:34198600-34202200	Weak transcription	Adipose Nuclei	Adipose
14	chr17:34198600-34202400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr17:34198600-34202400	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr17:34198800-34201800	Weak transcription	HUVEC	blood vessel
17	chr17:34198800-34202000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr17:34198800-34202200	Weak transcription	Fetal Muscle Leg	muscle
19	chr17:34198800-34202400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr17:34198800-34202400	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr17:34198800-34202600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr17:34198800-34206800	Weak transcription	Primary B cells from peripheral blood	blood
23	chr17:34198800-34206800	Weak transcription	Placenta	Placenta
24	chr17:34199200-34207200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr17:34199400-34202400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr17:34199400-34202400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr17:34199400-34202600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr17:34199600-34202400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr17:34199600-34202400	Weak transcription	Fetal Thymus	thymus
30	chr17:34199600-34202400	Weak transcription	Spleen	Spleen
31	chr17:34200000-34202600	Weak transcription	Primary T cells from cord blood	blood
32	chr17:34200800-34202400	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
33	chr17:34201200-34202400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr17:34201400-34204000	Enhancers	HepG2	liver

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