Variant report

Variant	rs59338510
Chromosome Location	chr17:34215102-34215103
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:34203987..34208838-chr17:34211046..34215665,5	K562	blood:

Variant related genes	Relation type
ENSG00000161570	Chromatin interaction

Extended variants
information (count: 128 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:128)

rs_ID	r²[population]
rs11080360	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11080361	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11080362	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11650409	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11652192	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11652536	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11653016	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11653051	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11653204	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11653282	0.83[EUR][1000 genomes]
rs11654713	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11655533	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11656556	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11657908	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11658222	0.87[ASN][1000 genomes]
rs11868244	0.83[EUR][1000 genomes]
rs11868801	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11869976	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16971670	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2014839	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2107540	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2251660	0.89[ASN][1000 genomes]
rs2280787	0.87[ASN][1000 genomes]
rs2280789	0.90[EUR][1000 genomes]
rs2376287	0.89[ASN][1000 genomes]
rs2526327	0.88[ASN][1000 genomes]
rs2526328	0.86[ASN][1000 genomes]
rs2702947	0.86[ASN][1000 genomes]
rs2702948	0.86[ASN][1000 genomes]
rs2735475	0.87[ASN][1000 genomes]
rs28550999	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28722787	0.89[ASN][1000 genomes]
rs28739295	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28912068	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34369685	0.85[ASN][1000 genomes]
rs3760326	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3760447	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3785764	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3809769	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3817656	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4251727	0.87[ASN][1000 genomes]
rs4251729	0.87[ASN][1000 genomes]
rs4251751	0.87[ASN][1000 genomes]
rs4251752	0.87[ASN][1000 genomes]
rs4251788	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4795089	0.81[ASN][1000 genomes]
rs4795091	0.91[ASN][1000 genomes]
rs4795092	0.91[ASN][1000 genomes]
rs4795095	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4795096	0.90[EUR][1000 genomes]
rs4795097	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4795099	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4795100	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4795101	0.86[ASN][1000 genomes]
rs4796112	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4796113	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4796114	0.90[ASN][1000 genomes]
rs4796115	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4796118	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4796119	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4796120	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4796123	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4796124	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4796125	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4796126	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4796127	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4796129	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4796130	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4796131	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4796133	0.87[ASN][1000 genomes]
rs4796134	0.89[ASN][1000 genomes]
rs4796136	0.89[ASN][1000 genomes]
rs4796137	0.89[ASN][1000 genomes]
rs4796138	0.86[ASN][1000 genomes]
rs55950249	0.85[EUR][1000 genomes]
rs56294660	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56344830	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59247105	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7213636	0.89[ASN][1000 genomes]
rs9303691	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9303693	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9754	0.85[ASN][1000 genomes]
rs9789051	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9889274	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9889874	0.82[EUR][1000 genomes]
rs9889977	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9890583	0.85[ASN][1000 genomes]
rs9891064	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9893004	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9894083	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9894314	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9894799	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9896265	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9896658	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9897665	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9898132	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9898152	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9899215	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9899866	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9899870	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9899881	0.88[ASN][1000 genomes]
rs9900236	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9900473	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9900563	0.82[EUR][1000 genomes]
rs9901195	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9901418	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9903590	0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9904675	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9907121	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9907145	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9907295	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9907588	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9908011	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9908525	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9908907	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9909050	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9911016	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9911598	0.87[ASN][1000 genomes]
rs9912049	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9912284	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9912552	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9912571	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9912793	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9912894	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9913488	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9913559	0.87[ASN][1000 genomes]
rs9914401	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9914468	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs59338510	RDM1	Cis_1M	lymphoblastoid	RTeQTL
rs59338510	TAF15	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:34192200-34218000	Weak transcription	Stomach Smooth Muscle	stomach
2	chr17:34207400-34219200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr17:34208000-34215800	Weak transcription	Placenta	Placenta
4	chr17:34208400-34215200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr17:34208400-34215400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr17:34208600-34215400	Weak transcription	GM12878-XiMat	blood
7	chr17:34214200-34223000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr17:34214600-34216200	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr17:34214800-34221800	Enhancers	Primary T cells fromperipheralblood	blood
10	chr17:34215000-34215800	Weak transcription	Primary T helper cells PMA-I stimulated	--

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