Variant report

Variant	rs34369685
Chromosome Location	chr17:34246242-34246243
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:34236497..34238510-chr17:34243558..34246809,3	K562	blood:
2	chr17:34242717..34244891-chr17:34245039..34247861,2	K562	blood:

Variant related genes	Relation type
ENSG00000266999	Chromatin interaction

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs11080360	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11080361	0.85[ASN][1000 genomes]
rs11080362	0.85[ASN][1000 genomes]
rs11650409	0.85[ASN][1000 genomes]
rs11652536	0.85[ASN][1000 genomes]
rs11653016	0.85[ASN][1000 genomes]
rs11653051	0.85[ASN][1000 genomes]
rs11653204	0.85[ASN][1000 genomes]
rs11654713	0.82[ASN][1000 genomes]
rs11655533	0.85[ASN][1000 genomes]
rs11656556	0.85[ASN][1000 genomes]
rs11657908	0.85[ASN][1000 genomes]
rs11868801	0.85[ASN][1000 genomes]
rs11869976	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs16971670	0.85[ASN][1000 genomes]
rs2107538	0.83[EUR][1000 genomes]
rs2107540	0.85[ASN][1000 genomes]
rs2251660	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2280787	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2376287	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2526327	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2526328	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2702947	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2702948	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2735475	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28550999	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs28722787	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28739295	0.85[ASN][1000 genomes]
rs28912068	0.82[ASN][1000 genomes]
rs3760447	0.82[ASN][1000 genomes]
rs3809769	0.85[ASN][1000 genomes]
rs4795099	0.84[ASN][1000 genomes]
rs4795100	0.85[ASN][1000 genomes]
rs4795101	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4796124	0.85[ASN][1000 genomes]
rs4796125	0.85[ASN][1000 genomes]
rs4796126	0.84[ASN][1000 genomes]
rs4796127	0.84[ASN][1000 genomes]
rs4796128	0.84[EUR][1000 genomes]
rs4796130	0.85[ASN][1000 genomes]
rs4796131	0.85[ASN][1000 genomes]
rs4796133	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4796134	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4796136	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4796137	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4796138	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56294660	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs56344830	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs59338510	0.85[ASN][1000 genomes]
rs7211393	0.83[EUR][1000 genomes]
rs7213636	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7215845	0.84[EUR][1000 genomes]
rs8066406	0.85[EUR][1000 genomes]
rs9303693	0.85[ASN][1000 genomes]
rs9754	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9789051	0.85[ASN][1000 genomes]
rs9889274	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9889977	0.85[ASN][1000 genomes]
rs9890583	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9891064	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9893004	0.85[ASN][1000 genomes]
rs9894314	0.85[ASN][1000 genomes]
rs9894799	0.85[ASN][1000 genomes]
rs9896265	0.85[ASN][1000 genomes]
rs9896658	0.85[ASN][1000 genomes]
rs9897665	0.85[ASN][1000 genomes]
rs9899215	0.85[ASN][1000 genomes]
rs9899866	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9899870	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9899881	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9900236	0.85[ASN][1000 genomes]
rs9901195	0.85[ASN][1000 genomes]
rs9901418	0.85[ASN][1000 genomes]
rs9903590	0.85[ASN][1000 genomes]
rs9904675	0.89[ASN][1000 genomes]
rs9907145	0.85[ASN][1000 genomes]
rs9907295	0.87[ASN][1000 genomes]
rs9908011	0.85[ASN][1000 genomes]
rs9908525	0.85[ASN][1000 genomes]
rs9909050	0.85[ASN][1000 genomes]
rs9911016	0.85[ASN][1000 genomes]
rs9912049	0.85[ASN][1000 genomes]
rs9912284	0.85[ASN][1000 genomes]
rs9912571	0.85[ASN][1000 genomes]
rs9912793	0.85[ASN][1000 genomes]
rs9912894	0.85[ASN][1000 genomes]
rs9913488	0.85[ASN][1000 genomes]
rs9913559	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9914468	0.85[ASN][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:34234600-34251200	Weak transcription	Fetal Thymus	thymus
2	chr17:34242600-34251400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr17:34243000-34249600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr17:34244600-34252200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr17:34244800-34256800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr17:34244800-34257000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr17:34245400-34250000	Weak transcription	Fetal Intestine Small	intestine
8	chr17:34245400-34255000	Weak transcription	Fetal Intestine Large	intestine
9	chr17:34245600-34246600	Weak transcription	K562	blood
10	chr17:34245600-34257200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr17:34245800-34247400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr17:34245800-34251400	Weak transcription	Primary T cells from cord blood	blood
13	chr17:34246000-34249600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr17:34246000-34251200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr17:34246000-34256800	Weak transcription	Primary hematopoietic stem cells	blood
16	chr17:34246000-34256800	Weak transcription	Thymus	Thymus
17	chr17:34246200-34249400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links