Variant report

Variant	rs8066406
Chromosome Location	chr17:34232554-34232555
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11650668	0.81[EUR][1000 genomes]
rs2107538	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2251660	0.89[EUR][1000 genomes]
rs2280787	0.89[EUR][1000 genomes]
rs2291299	0.88[EUR][1000 genomes]
rs2376287	0.89[EUR][1000 genomes]
rs2526327	0.89[EUR][1000 genomes]
rs2526328	0.88[EUR][1000 genomes]
rs2702947	0.85[EUR][1000 genomes]
rs2702948	0.86[EUR][1000 genomes]
rs2735475	0.89[EUR][1000 genomes]
rs28595279	0.82[EUR][1000 genomes]
rs28722787	0.89[EUR][1000 genomes]
rs34369685	0.85[EUR][1000 genomes]
rs3760327	0.85[EUR][1000 genomes]
rs3817655	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4079183	0.80[EUR][1000 genomes]
rs4239252	0.85[EUR][1000 genomes]
rs4251703	0.83[EUR][1000 genomes]
rs4251749	0.82[EUR][1000 genomes]
rs4251787	0.86[EUR][1000 genomes]
rs4251791	0.84[EUR][1000 genomes]
rs4325615	0.82[EUR][1000 genomes]
rs4795101	0.88[EUR][1000 genomes]
rs4796116	0.85[EUR][1000 genomes]
rs4796128	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4796133	0.89[EUR][1000 genomes]
rs4796134	0.89[EUR][1000 genomes]
rs4796136	0.89[EUR][1000 genomes]
rs4796137	0.89[EUR][1000 genomes]
rs4796138	0.88[EUR][1000 genomes]
rs6505496	0.80[EUR][1000 genomes]
rs6505498	0.80[EUR][1000 genomes]
rs7211393	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7213636	0.89[EUR][1000 genomes]
rs7215845	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8069014	0.86[EUR][1000 genomes]
rs8080959	0.82[EUR][1000 genomes]
rs9754	0.88[EUR][1000 genomes]
rs9890583	0.89[EUR][1000 genomes]
rs9899881	0.89[EUR][1000 genomes]
rs9908928	0.88[EUR][1000 genomes]
rs9913559	0.89[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs8066406	TAF15	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:34228200-34233600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr17:34229200-34233200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr17:34229200-34236800	Weak transcription	K562	blood
4	chr17:34229800-34240000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr17:34230000-34245400	Weak transcription	Primary T cells from cord blood	blood
6	chr17:34230400-34233800	Weak transcription	Fetal Thymus	thymus
7	chr17:34231000-34233800	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr17:34231200-34233000	Weak transcription	Fetal Intestine Small	intestine
9	chr17:34231200-34233000	Weak transcription	Placenta	Placenta
10	chr17:34231200-34233400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr17:34231200-34233400	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr17:34231400-34234000	Weak transcription	Thymus	Thymus
13	chr17:34231800-34234200	Enhancers	Fetal Intestine Large	intestine

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