Variant report

Variant	rs7211393
Chromosome Location	chr17:34212128-34212129
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:34211391..34213813-chr17:34217158..34219522,2	MCF-7	breast:
2	chr17:34203987..34208838-chr17:34211046..34215665,5	K562	blood:
3	chr17:34211096..34213839-chr17:34217874..34221211,4	K562	blood:

Variant related genes	Relation type
ENSG00000161570	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs11650668	0.84[AFR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11653282	0.93[ASN][1000 genomes]
rs11868244	0.93[ASN][1000 genomes]
rs2107538	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2251660	0.86[EUR][1000 genomes]
rs2280787	0.86[EUR][1000 genomes]
rs2280789	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2291299	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2306630	0.88[ASN][1000 genomes]
rs2376287	0.86[EUR][1000 genomes]
rs2526327	0.86[EUR][1000 genomes]
rs2526328	0.85[EUR][1000 genomes]
rs2702947	0.83[EUR][1000 genomes]
rs2702948	0.83[EUR][1000 genomes]
rs2735475	0.86[EUR][1000 genomes]
rs28595279	0.84[AFR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28722787	0.86[EUR][1000 genomes]
rs34369685	0.83[EUR][1000 genomes]
rs3760327	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3817655	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4079183	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4239252	0.86[EUR][1000 genomes]
rs4251703	0.85[EUR][1000 genomes]
rs4251719	0.88[ASN][1000 genomes]
rs4251724	0.83[AFR][1000 genomes]
rs4251737	0.86[ASN][1000 genomes]
rs4251749	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4251769	0.88[ASN][1000 genomes]
rs4251787	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4251791	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4325615	0.84[AFR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4795093	0.88[ASN][1000 genomes]
rs4795096	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4795101	0.85[EUR][1000 genomes]
rs4796116	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4796128	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4796133	0.86[EUR][1000 genomes]
rs4796134	0.86[EUR][1000 genomes]
rs4796136	0.86[EUR][1000 genomes]
rs4796137	0.86[EUR][1000 genomes]
rs4796138	0.85[EUR][1000 genomes]
rs55950249	0.91[ASN][1000 genomes]
rs7213636	0.86[EUR][1000 genomes]
rs7215845	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8066406	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8069014	0.86[AFR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8080959	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9303692	0.92[ASN][1000 genomes]
rs9754	0.85[EUR][1000 genomes]
rs9889874	0.93[ASN][1000 genomes]
rs9890583	0.86[EUR][1000 genomes]
rs9899881	0.86[EUR][1000 genomes]
rs9900563	0.92[ASN][1000 genomes]
rs9908928	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9909416	0.93[ASN][1000 genomes]
rs9913559	0.86[EUR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7211393	RDM1	Cis_1M	lymphoblastoid	RTeQTL
rs7211393	RDM1	cis	multi-tissue	Pritchard
rs7211393	TAF15	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:34192200-34218000	Weak transcription	Stomach Smooth Muscle	stomach
2	chr17:34192400-34213200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr17:34207400-34219200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr17:34208000-34215800	Weak transcription	Placenta	Placenta
5	chr17:34208400-34214200	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr17:34208400-34215200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr17:34208400-34215400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr17:34208600-34215400	Weak transcription	GM12878-XiMat	blood
9	chr17:34209600-34214200	Weak transcription	Aorta	Aorta
10	chr17:34209800-34214200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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