Variant report

Variant	rs11650668
Chromosome Location	chr17:34149049-34149050
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11653282	0.84[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs11868244	0.81[ASN][1000 genomes]
rs11868785	0.88[CEU][hapmap];0.88[JPT][hapmap];0.83[AMR][1000 genomes]
rs2107538	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2280789	0.88[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2291299	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2306630	0.88[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs28595279	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35517765	0.81[EUR][1000 genomes]
rs3760327	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3785764	0.85[CEU][hapmap]
rs3817655	0.88[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3826404	0.83[CHB][hapmap]
rs4079183	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4239252	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4251703	1.00[CEU][hapmap];0.85[CHB][hapmap];0.88[JPT][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4251710	0.86[YRI][hapmap];0.86[AFR][1000 genomes]
rs4251719	0.88[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4251724	1.00[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4251737	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4251749	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4251769	0.88[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4251787	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4251791	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4325615	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4795087	0.88[CHB][hapmap]
rs4795090	0.89[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.91[YRI][hapmap];0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4795093	0.87[ASN][1000 genomes]
rs4795096	0.88[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs4796105	0.89[CEU][hapmap]
rs4796116	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4796123	0.88[CEU][hapmap]
rs4796128	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.84[AFR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55950249	0.80[ASN][1000 genomes]
rs6505496	1.00[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.86[YRI][hapmap];0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6505498	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7211393	0.84[AFR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7215845	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8066406	0.81[EUR][1000 genomes]
rs8069014	0.95[AFR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs8080959	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9303692	0.88[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9889874	0.88[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs9900563	0.82[ASN][1000 genomes]
rs9908928	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9909416	0.88[JPT][hapmap];0.84[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs11650668	RDM1	Cis_1M	lymphoblastoid	RTeQTL
rs11650668	RDM1	cis	multi-tissue	Pritchard
rs11650668	TAF15	cis	normal skin	skin_eQTL
rs11650668	TAF15	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:34137600-34149200	Weak transcription	Gastric	stomach
2	chr17:34137800-34149200	Weak transcription	Esophagus	oesophagus
3	chr17:34137800-34149800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr17:34137800-34152000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr17:34137800-34154000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr17:34138000-34149600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr17:34138000-34153400	Weak transcription	Right Ventricle	heart
8	chr17:34138000-34164200	Weak transcription	Colonic Mucosa	Colon
9	chr17:34138200-34149400	Weak transcription	HSMMtube	muscle
10	chr17:34138200-34149600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr17:34138200-34151600	Weak transcription	Fetal Heart	heart
12	chr17:34138600-34180800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr17:34138800-34184000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr17:34139200-34184200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr17:34139400-34149400	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr17:34139400-34163800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr17:34139400-34163800	Weak transcription	Spleen	Spleen
18	chr17:34139400-34177600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
19	chr17:34140800-34149600	Weak transcription	Fetal Brain Male	brain
20	chr17:34141600-34177400	Strong transcription	HUES64 Cell Line	embryonic stem cell
21	chr17:34141800-34159800	Weak transcription	Aorta	Aorta
22	chr17:34142000-34175800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
23	chr17:34142000-34177600	Strong transcription	HUES48 Cell Line	embryonic stem cell
24	chr17:34142200-34152600	Strong transcription	Primary B cells from cord blood	blood
25	chr17:34142400-34177600	Strong transcription	Fetal Thymus	thymus
26	chr17:34142400-34178200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr17:34142600-34173200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr17:34142600-34175600	Strong transcription	H1 Cell Line	embryonic stem cell
29	chr17:34142600-34177400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
30	chr17:34142600-34180400	Strong transcription	HUES6 Cell Line	embryonic stem cell
31	chr17:34142800-34149600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr17:34142800-34153400	Strong transcription	Placenta	Placenta
33	chr17:34142800-34173200	Strong transcription	Osteobl	bone
34	chr17:34142800-34178600	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr17:34142800-34180800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr17:34142800-34181000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr17:34143000-34152600	Strong transcription	Hela-S3	cervix
38	chr17:34143000-34174800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr17:34143000-34177400	Strong transcription	Primary monocytes fromperipheralblood	blood
40	chr17:34143000-34177400	Strong transcription	Primary B cells from peripheral blood	blood
41	chr17:34143200-34166200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr17:34143400-34173200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr17:34143600-34158800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr17:34143600-34168200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr17:34144000-34175600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr17:34144000-34180000	Strong transcription	HSMM	muscle
47	chr17:34144200-34149400	Weak transcription	Psoas Muscle	Psoas
48	chr17:34144200-34149600	Weak transcription	Ovary	ovary
49	chr17:34144200-34153800	Weak transcription	Lung	lung
50	chr17:34144200-34164200	Weak transcription	Pancreas	Pancrea

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