Variant report

Variant	rs4796105
Chromosome Location	chr17:34085967-34085968
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1994182	0.91[CEU][hapmap];0.86[GIH][hapmap];0.89[TSI][hapmap];0.91[EUR][1000 genomes]
rs2107538	0.91[CEU][hapmap];0.84[TSI][hapmap]
rs2251660	0.88[TSI][hapmap]
rs2291299	0.91[CEU][hapmap];0.92[TSI][hapmap]
rs2526327	0.88[TSI][hapmap]
rs2735475	0.88[TSI][hapmap]
rs35517765	0.89[EUR][1000 genomes]
rs3826404	0.82[ASW][hapmap];0.91[CEU][hapmap];0.93[GIH][hapmap];0.89[MEX][hapmap];0.86[MKK][hapmap];0.93[TSI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4251703	0.90[CEU][hapmap]
rs4251724	1.00[CEU][hapmap]
rs4795087	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4795090	1.00[CEU][hapmap];0.92[TSI][hapmap];0.80[EUR][1000 genomes]
rs4796128	0.91[CEU][hapmap];0.92[TSI][hapmap]
rs4796138	0.88[TSI][hapmap]
rs55858632	0.90[EUR][1000 genomes]
rs6505496	0.91[CEU][hapmap];0.92[TSI][hapmap]
rs9754	0.88[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534371	chr17:33456878-34094068	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	137 gene(s)	inside rSNPs	diseases

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs4796105	AMAC1	cis	cerebellum	SCAN
rs4796105	TAF15	Cis_1M	lymphoblastoid	RTeQTL
rs4796105	ADAP2	cis	parietal	SCAN
rs4796105	RDM1	cis	lymphoblastoid	seeQTL
rs4796105	C17orf50	cis	cerebellum	SCAN
rs4796105	CCL5	cis	lymphoblastoid	seeQTL
rs4796105	RDM1	cis	Lymphoblastoid	GTEx

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:34080600-34087400	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr17:34083200-34091000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr17:34085200-34091000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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