Variant report

Variant	rs35517765
Chromosome Location	chr17:34107165-34107166
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:34100630..34103583-chr17:34107031..34108595,2	K562	blood:
2	chr17:34107060..34109022-chr17:34127113..34129378,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11650668	0.81[EUR][1000 genomes]
rs11868785	0.83[ASN][1000 genomes]
rs1994182	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28595279	0.81[EUR][1000 genomes]
rs3826404	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4251703	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4251724	0.83[ASN][1000 genomes]
rs4251749	0.81[EUR][1000 genomes]
rs4325615	0.81[EUR][1000 genomes]
rs4795087	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4795090	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4796105	0.89[EUR][1000 genomes]
rs55858632	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6505496	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6505498	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8080959	0.81[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs35517765	TAF15	Cis_1M	lymphoblastoid	RTeQTL
rs35517765	RDM1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:34092400-34114200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr17:34101600-34107200	Weak transcription	Brain Substantia Nigra	brain
3	chr17:34102000-34110200	Weak transcription	Brain Angular Gyrus	brain
4	chr17:34102400-34110400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr17:34102400-34110400	Weak transcription	Aorta	Aorta
6	chr17:34102600-34110200	Weak transcription	Fetal Heart	heart
7	chr17:34102600-34113400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr17:34102800-34107800	Weak transcription	Fetal Brain Male	brain
9	chr17:34102800-34108000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr17:34102800-34108200	Weak transcription	Fetal Brain Female	brain
11	chr17:34102800-34108400	Weak transcription	Colonic Mucosa	Colon
12	chr17:34102800-34110200	Weak transcription	Brain Anterior Caudate	brain
13	chr17:34102800-34110200	Weak transcription	Colon Smooth Muscle	Colon
14	chr17:34103000-34110400	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr17:34103800-34108000	Weak transcription	Fetal Intestine Small	intestine
16	chr17:34104200-34108000	Weak transcription	Duodenum Mucosa	Duodenum
17	chr17:34104400-34110400	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr17:34104600-34108000	Weak transcription	Stomach Mucosa	stomach
19	chr17:34104600-34111600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr17:34105200-34110000	Weak transcription	Liver	Liver
21	chr17:34106000-34108000	Weak transcription	Hela-S3	cervix
22	chr17:34106000-34121400	Weak transcription	Primary hematopoietic stem cells	blood
23	chr17:34106200-34109200	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr17:34106200-34110400	Weak transcription	Right Atrium	heart
25	chr17:34106200-34111600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr17:34106400-34107600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr17:34106400-34108000	Weak transcription	Fetal Intestine Large	intestine
28	chr17:34106400-34108400	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr17:34106400-34110000	Weak transcription	Fetal Stomach	stomach
30	chr17:34106400-34110200	Weak transcription	NHEK	skin
31	chr17:34106400-34110400	Weak transcription	Lung	lung
32	chr17:34106400-34111400	Weak transcription	Gastric	stomach
33	chr17:34106400-34115800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr17:34106600-34110000	Weak transcription	Adipose Nuclei	Adipose
35	chr17:34106600-34110400	Weak transcription	Esophagus	oesophagus
36	chr17:34106800-34107800	Weak transcription	HMEC	breast
37	chr17:34106800-34109600	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr17:34106800-34110400	Weak transcription	Rectal Smooth Muscle	rectum
39	chr17:34106800-34110400	Weak transcription	Stomach Smooth Muscle	stomach
40	chr17:34107000-34110400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr17:34107000-34114000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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