The 2.0 version of rSNPBase

Variant report

Variant rs55858632
Chromosome Location chr17:34099741-34099742
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:46 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr17:34091800-34101800 Weak transcription Aorta Aorta
2 chr17:34091800-34103600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
3 chr17:34092000-34100000 Weak transcription Right Atrium heart
4 chr17:34092000-34100400 Weak transcription Lung lung
5 chr17:34092000-34100800 Weak transcription Fetal Brain Female brain
6 chr17:34092000-34101800 Weak transcription HMEC breast
7 chr17:34092200-34100200 Weak transcription Colon Smooth Muscle Colon
8 chr17:34092400-34100400 Weak transcription Stomach Mucosa stomach
9 chr17:34092400-34101000 Weak transcription Brain Substantia Nigra brain
10 chr17:34092400-34101200 Weak transcription Sigmoid Colon Sigmoid Colon
11 chr17:34092400-34114200 Weak transcription Primary T helper naive cells fromperipheralblood blood
12 chr17:34092600-34100800 Weak transcription Colonic Mucosa Colon
13 chr17:34093200-34100000 Weak transcription Cortex derived primary cultured neurospheres brain
14 chr17:34093200-34100600 Weak transcription Fetal Intestine Large intestine
15 chr17:34093400-34100200 Weak transcription Brain Germinal Matrix brain
16 chr17:34093800-34100600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
17 chr17:34094000-34100000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
18 chr17:34094000-34100600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
19 chr17:34094800-34100800 Weak transcription Hela-S3 cervix
20 chr17:34096600-34100600 Weak transcription Fetal Intestine Small intestine
21 chr17:34097400-34100000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
22 chr17:34097600-34102800 Enhancers Primary hematopoietic stem cells short term culture blood
23 chr17:34098000-34100200 Weak transcription Rectal Mucosa Donor 31 rectum
24 chr17:34098200-34101200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
25 chr17:34098800-34102400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
26 chr17:34098800-34102600 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
27 chr17:34098800-34102800 Enhancers H1 Cell Line embryonic stem cell
28 chr17:34098800-34102800 Enhancers Primary hematopoietic stem cells blood
29 chr17:34098800-34103600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
30 chr17:34099000-34101000 Enhancers Stomach Smooth Muscle stomach
31 chr17:34099000-34102400 Enhancers ES-UCSF4 Cell Line embryonic stem cell
32 chr17:34099200-34099800 Enhancers ES-WA7 Cell Line embryonic stem cell
33 chr17:34099200-34101200 Weak transcription Esophagus oesophagus
34 chr17:34099400-34100400 Bivalent Enhancer Fetal Muscle Trunk muscle
35 chr17:34099400-34100600 Weak transcription HUES6 Cell Line embryonic stem cell
36 chr17:34099400-34100800 Weak transcription HUES48 Cell Line embryonic stem cell
37 chr17:34099400-34100800 Weak transcription iPS-20b Cell Line embryonic stem cell
38 chr17:34099400-34101000 Weak transcription H9 Cell Line embryonic stem cell
39 chr17:34099400-34101800 Enhancers iPS DF 6.9 Cell Line embryonic stem cell
40 chr17:34099400-34103000 Enhancers Fetal Thymus thymus
41 chr17:34099600-34100000 Weak transcription Right Ventricle heart
42 chr17:34099600-34100800 Weak transcription iPS-15b Cell Line embryonic stem cell
43 chr17:34099600-34101000 Weak transcription HUES64 Cell Line embryonic stem cell
44 chr17:34099600-34101000 Weak transcription iPS-18 Cell Line embryonic stem cell
45 chr17:34099600-34101800 Enhancers Adipose Nuclei Adipose
46 chr17:34099600-34101800 Enhancers Fetal Stomach stomach

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Last update: Aug 31, 2015