Variant report

Variant	rs4795087
Chromosome Location	chr17:34091078-34091079
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:34090556..34091796-chr17:34131289..34132511,13	K562	blood:
2	chr17:34090826..34092020-chr17:34131465..34132411,7	MCF-7	breast:
3	chr17:34089535..34095936-chr17:34135210..34140609,14	MCF-7	breast:
4	chr17:34090801..34091757-chr17:34135545..34136907,10	K562	blood:
5	chr17:34068292..34072189-chr17:34089622..34092820,3	K562	blood:
6	chr17:34090980..34091681-chr17:34135508..34136259,2	MCF-7	breast:
7	chr17:34088647..34092171-chr17:34135007..34141299,8	K562	blood:
8	chr17:34090496..34092108-chr17:34131328..34132437,19	MCF-7	breast:
9	chr17:34090837..34091821-chr17:34135600..34136600,6	MCF-7	breast:
10	chr17:34090852..34091646-chr17:34176145..34176936,2	K562	blood:
11	chr17:34088647..34093866-chr17:34134759..34138052,9	K562	blood:

No data

Variant related genes	Relation type
ENSG00000267578	Chromatin interaction
ENSG00000172660	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11653282	0.81[CHB][hapmap]
rs1994182	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2107538	0.83[CHB][hapmap]
rs2280789	0.81[CHB][hapmap]
rs2291299	0.83[CHB][hapmap]
rs2306630	0.81[CHB][hapmap]
rs35517765	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3817655	0.83[CHB][hapmap]
rs3826404	1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4251703	0.81[EUR][1000 genomes]
rs4251719	0.81[CHB][hapmap]
rs4251769	0.81[CHB][hapmap]
rs4795090	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4795096	0.81[CHB][hapmap]
rs4796105	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55858632	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6505496	0.86[EUR][1000 genomes]
rs6505498	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9303692	0.81[CHB][hapmap]
rs9889874	0.81[CHB][hapmap]
rs9909416	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534371	chr17:33456878-34094068	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	137 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4795087	TAF15	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:34090800-34091400	Enhancers	Primary B cells from cord blood	blood
2	chr17:34090800-34091400	Enhancers	Placenta	Placenta
3	chr17:34090800-34091600	Active TSS	Primary T regulatory cells fromperipheralblood	blood
4	chr17:34090800-34092400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr17:34090800-34092400	Flanking Active TSS	Dnd41	blood
6	chr17:34091000-34091200	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr17:34091000-34091200	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr17:34091000-34091200	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
9	chr17:34091000-34091200	Flanking Active TSS	Primary B cells from peripheral blood	blood
10	chr17:34091000-34091200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
11	chr17:34091000-34091200	Flanking Active TSS	Primary hematopoietic stem cells	blood
12	chr17:34091000-34091200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
13	chr17:34091000-34091200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
14	chr17:34091000-34091200	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
15	chr17:34091000-34091200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr17:34091000-34091200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr17:34091000-34091200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
18	chr17:34091000-34091200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
19	chr17:34091000-34091200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr17:34091000-34091200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr17:34091000-34091200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr17:34091000-34091200	Flanking Active TSS	Adipose Nuclei	Adipose
23	chr17:34091000-34091200	Enhancers	Liver	Liver
24	chr17:34091000-34091200	Flanking Active TSS	Brain Germinal Matrix	brain
25	chr17:34091000-34091200	Flanking Active TSS	Duodenum Mucosa	Duodenum
26	chr17:34091000-34091200	Flanking Active TSS	Fetal Intestine Small	intestine
27	chr17:34091000-34091200	Flanking Active TSS	Fetal Lung	lung
28	chr17:34091000-34091200	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
29	chr17:34091000-34091200	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
30	chr17:34091000-34091200	Flanking Active TSS	Gastric	stomach
31	chr17:34091000-34091200	Enhancers	Ovary	ovary
32	chr17:34091000-34091200	Flanking Active TSS	Pancreas	Pancrea
33	chr17:34091000-34091200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
34	chr17:34091000-34091200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
35	chr17:34091000-34091200	Transcr. at gene 5' and 3'	Right Atrium	heart
36	chr17:34091000-34091200	Flanking Active TSS	Right Ventricle	heart
37	chr17:34091000-34091200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
38	chr17:34091000-34091200	Flanking Active TSS	Thymus	Thymus
39	chr17:34091000-34091200	Flanking Active TSS	HMEC	breast
40	chr17:34091000-34091200	Flanking Active TSS	HSMM	muscle
41	chr17:34091000-34091200	Flanking Active TSS	HUVEC	blood vessel
42	chr17:34091000-34091200	Flanking Active TSS	K562	blood
43	chr17:34091000-34091200	Flanking Active TSS	NHEK	skin
44	chr17:34091000-34091200	Flanking Active TSS	Osteobl	bone
45	chr17:34091000-34091400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr17:34091000-34091400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr17:34091000-34091400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr17:34091000-34091400	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
49	chr17:34091000-34091400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
50	chr17:34091000-34091400	Active TSS	Primary T helper 17 cells PMA-I stimulated	--

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