Variant report

Variant	rs4796084
Chromosome Location	chr17:33777003-33777004
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F6	chr17:33775074-33777003	H1-hESC	embryonic stem cell:	n/a	chr17:33775477-33775486 chr17:33775606-33775615
2	BHLHE40	chr17:33776566-33777039	GM12878	blood:	n/a	chr17:33776633-33776649
3	RUNX3	chr17:33776321-33777119	GM12878	blood:	n/a	n/a
4	POU2F2	chr17:33775091-33777021	GM12878	blood:	n/a	chr17:33775474-33775486 chr17:33775599-33775611 chr17:33775602-33775614 chr17:33776338-33776350 chr17:33775578-33775590 chr17:33775477-33775489 chr17:33776344-33776356
5	EP300	chr17:33776610-33777090	GM12878	blood:	n/a	n/a
6	EP300	chr17:33776520-33777087	GM12878	blood:	n/a	n/a
7	POLR2A	chr17:33775076-33777020	GM12892	blood:	n/a	n/a
8	POLR2A	chr17:33775055-33777039	HL-60	blood:	n/a	n/a
9	RUNX3	chr17:33776182-33777020	GM12878	blood:	n/a	n/a
10	SPI1	chr17:33776491-33777038	HL-60	blood:	n/a	n/a
11	POLR2A	chr17:33776345-33777022	GM12892	blood:	n/a	n/a
12	POLR2A	chr17:33775068-33777022	GM12878	blood:	n/a	n/a
13	CUX1	chr17:33776371-33777219	GM12878	blood:	n/a	n/a
14	CHD2	chr17:33776525-33777078	GM12878	blood:	n/a	n/a
15	EP300	chr17:33776563-33777077	GM12878	blood:	n/a	n/a
16	BCLAF1	chr17:33776496-33777074	GM12878	blood:	n/a	chr17:33776633-33776646
17	MAZ	chr17:33776566-33777048	GM12878	blood:	n/a	n/a
18	PML	chr17:33776251-33777098	GM12878	blood:	n/a	chr17:33776488-33776496
19	POLR2A	chr17:33775131-33777018	NB4	blood:	n/a	n/a
20	ZNF384	chr17:33776724-33777256	GM12878	blood:	n/a	n/a
21	PAX5	chr17:33776535-33777025	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
SLFN13	TF binding region

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12601979	0.92[CHB][hapmap];0.92[JPT][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4796085	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56390508	0.91[ASN][1000 genomes]
rs57580463	1.00[EUR][1000 genomes]
rs7214197	0.91[CHB][hapmap];0.92[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7225069	1.00[EUR][1000 genomes]
rs73275017	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73275023	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73281411	1.00[EUR][1000 genomes]
rs73281414	1.00[EUR][1000 genomes]
rs8064988	1.00[EUR][1000 genomes]
rs8069360	1.00[EUR][1000 genomes]
rs8076783	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055936	chr17:33327166-33884184	Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
2	nsv543317	chr17:33327166-33884184	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
3	nsv534371	chr17:33456878-34094068	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	137 gene(s)	inside rSNPs	diseases
4	nsv574741	chr17:33552275-33827134	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
5	nsv1056116	chr17:33691457-33815452	Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	esv3432530	chr17:33738621-33802241	Flanking Active TSS Strong transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:33774200-33777200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr17:33775600-33777200	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
3	chr17:33776800-33777200	Enhancers	Primary B cells from peripheral blood	blood
4	chr17:33776800-33777200	Enhancers	Primary hematopoietic stem cells	blood
5	chr17:33776800-33777200	Active TSS	GM12878-XiMat	blood
6	chr17:33776800-33787000	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr17:33776800-33790400	Weak transcription	Dnd41	blood
8	chr17:33777000-33777200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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