Variant report

Variant	rs8069360
Chromosome Location	chr17:33804286-33804287
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr17:33804153-33804720	SK-N-MC	brain:	n/a	n/a

Variant related genes	Relation type
ENSG00000267349	TF binding region

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12601979	1.00[EUR][1000 genomes]
rs12939675	0.90[ASN][1000 genomes]
rs2304967	0.90[ASN][1000 genomes]
rs34620580	0.90[ASN][1000 genomes]
rs34646901	0.90[ASN][1000 genomes]
rs34656640	0.87[ASN][1000 genomes]
rs34747751	0.90[ASN][1000 genomes]
rs35367381	0.90[ASN][1000 genomes]
rs3744372	0.90[ASN][1000 genomes]
rs4796084	1.00[EUR][1000 genomes]
rs4796085	1.00[EUR][1000 genomes]
rs55668225	0.89[ASN][1000 genomes]
rs56033496	0.90[ASN][1000 genomes]
rs56845839	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs57580463	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60191377	0.97[ASN][1000 genomes]
rs67338337	0.88[ASN][1000 genomes]
rs7214197	1.00[EUR][1000 genomes]
rs7225069	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73275017	1.00[EUR][1000 genomes]
rs73275023	1.00[EUR][1000 genomes]
rs73281411	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73281414	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8064887	0.90[ASN][1000 genomes]
rs8064988	0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8065289	0.90[ASN][1000 genomes]
rs8076783	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8079653	0.90[ASN][1000 genomes]
rs8082478	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055936	chr17:33327166-33884184	Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
2	nsv543317	chr17:33327166-33884184	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
3	nsv534371	chr17:33456878-34094068	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	137 gene(s)	inside rSNPs	diseases
4	nsv574741	chr17:33552275-33827134	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
5	nsv1056116	chr17:33691457-33815452	Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:33800400-33807200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr17:33800400-33809400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr17:33800800-33807200	Strong transcription	Primary T cells fromperipheralblood	blood
4	chr17:33801000-33804400	ZNF genes & repeats	Primary T cells from cord blood	blood
5	chr17:33801000-33805200	Strong transcription	Primary T helper cells fromperipheralblood	blood
6	chr17:33801800-33809400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr17:33802600-33804600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr17:33802600-33806200	Weak transcription	GM12878-XiMat	blood
9	chr17:33803400-33806200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr17:33804000-33804800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr17:33804000-33805000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr17:33804000-33805200	Strong transcription	Primary T helper cells PMA-I stimulated	--
13	chr17:33804200-33805000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr17:33804200-33805000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr17:33804200-33805200	Weak transcription	Dnd41	blood
16	chr17:33804200-33805400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr17:33804200-33805600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links