Variant report

Variant	rs60191377
Chromosome Location	chr17:33809853-33809854
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12939675	0.88[ASN][1000 genomes]
rs2304967	0.88[ASN][1000 genomes]
rs34620580	0.88[ASN][1000 genomes]
rs34646901	0.88[ASN][1000 genomes]
rs34656640	0.84[ASN][1000 genomes]
rs34747751	0.88[ASN][1000 genomes]
rs35367381	0.88[ASN][1000 genomes]
rs3744372	0.88[ASN][1000 genomes]
rs55668225	0.86[ASN][1000 genomes]
rs56033496	0.88[ASN][1000 genomes]
rs56845839	0.86[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs57580463	0.97[ASN][1000 genomes]
rs67338337	0.85[ASN][1000 genomes]
rs73281411	0.82[ASN][1000 genomes]
rs73281414	0.82[ASN][1000 genomes]
rs8064887	0.88[ASN][1000 genomes]
rs8064988	0.97[ASN][1000 genomes]
rs8065289	0.88[ASN][1000 genomes]
rs8069360	0.97[ASN][1000 genomes]
rs8076783	0.97[ASN][1000 genomes]
rs8079653	0.88[ASN][1000 genomes]
rs8082478	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055936	chr17:33327166-33884184	Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
2	nsv543317	chr17:33327166-33884184	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
3	nsv534371	chr17:33456878-34094068	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	137 gene(s)	inside rSNPs	diseases
4	nsv574741	chr17:33552275-33827134	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
5	nsv1056116	chr17:33691457-33815452	Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:33807000-33811000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr17:33807200-33810000	Weak transcription	GM12878-XiMat	blood
3	chr17:33807200-33810200	Weak transcription	Primary T cells from cord blood	blood
4	chr17:33807200-33810400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr17:33807200-33811200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr17:33807200-33812800	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr17:33807400-33811400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr17:33808200-33810000	Strong transcription	Primary T helper cells fromperipheralblood	blood
9	chr17:33808600-33812800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr17:33809200-33810800	Strong transcription	Dnd41	blood
11	chr17:33809200-33811800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
12	chr17:33809200-33811800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr17:33809400-33810400	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr17:33809400-33810400	ZNF genes & repeats	Thymus	Thymus
15	chr17:33809600-33810200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr17:33809600-33810200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr17:33809600-33810400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr17:33809600-33811600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr17:33809800-33810200	Genic enhancers	Primary T cells fromperipheralblood	blood
20	chr17:33809800-33813800	Weak transcription	Spleen	Spleen

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