Variant report

Variant	rs4799330
Chromosome Location	chr18:29783478-29783479
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11081752	0.85[ASN][1000 genomes]
rs1561815	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1561816	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16962815	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16962818	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4799641	0.82[ASN][1000 genomes]
rs616114	0.91[ASN][1000 genomes]
rs625188	0.90[ASN][1000 genomes]
rs673408	0.90[ASN][1000 genomes]
rs677887	0.90[ASN][1000 genomes]
rs679163	0.86[ASN][1000 genomes]
rs680321	0.91[ASN][1000 genomes]
rs7233927	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9953120	0.98[ASN][1000 genomes]
rs9965114	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056007	chr18:29711974-29899564	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29782400-29784600	Weak transcription	Fetal Intestine Large	intestine
2	chr18:29782600-29784600	Weak transcription	Fetal Intestine Small	intestine
3	chr18:29783000-29784600	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr18:29783000-29787200	Weak transcription	Duodenum Mucosa	Duodenum
5	chr18:29783200-29786800	Weak transcription	Rectal Mucosa Donor 31	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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