Variant report

Variant	rs679163
Chromosome Location	chr18:29822893-29822894
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11081752	0.91[ASN][1000 genomes]
rs1561815	0.85[ASN][1000 genomes]
rs1561816	0.85[ASN][1000 genomes]
rs16962815	0.85[ASN][1000 genomes]
rs16962818	0.85[ASN][1000 genomes]
rs4799330	0.86[ASN][1000 genomes]
rs4799641	0.95[ASN][1000 genomes]
rs616114	0.92[ASN][1000 genomes]
rs625188	0.96[ASN][1000 genomes]
rs673408	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs677887	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs680321	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7233927	0.85[ASN][1000 genomes]
rs9953120	0.86[ASN][1000 genomes]
rs9965114	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056007	chr18:29711974-29899564	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv833616	chr18:29792336-29964212	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29819000-29823400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr18:29819000-29823400	Weak transcription	Aorta	Aorta
3	chr18:29821200-29824000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr18:29821200-29832400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr18:29821800-29825000	Weak transcription	Fetal Brain Male	brain
6	chr18:29822200-29823200	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr18:29822200-29823200	Enhancers	Sigmoid Colon	Sigmoid Colon
8	chr18:29822200-29831400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr18:29822400-29823200	Weak transcription	Fetal Brain Female	brain
10	chr18:29822400-29831200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr18:29822600-29831200	Weak transcription	H9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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