Variant report

Variant	rs481333
Chromosome Location	chr6:11611648-11611649
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11603395..11605168-chr6:11610638..11612350,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs505571	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs563605	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs571416	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs481333	TMEM170B	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11606000-11612600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr6:11607600-11615200	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr6:11608200-11613600	Weak transcription	Rectal Smooth Muscle	rectum
4	chr6:11608200-11615600	Weak transcription	Colon Smooth Muscle	Colon
5	chr6:11608800-11614200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr6:11609000-11612200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:11610000-11613800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:11610200-11613600	Enhancers	HUVEC	blood vessel
9	chr6:11610200-11613800	Weak transcription	Stomach Smooth Muscle	stomach
10	chr6:11610200-11631400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr6:11610600-11613200	Weak transcription	Osteobl	bone
12	chr6:11610600-11615600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:11610800-11613200	Weak transcription	Hela-S3	cervix
14	chr6:11610800-11613400	Weak transcription	A549	lung
15	chr6:11611000-11613600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr6:11611200-11612400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr6:11611200-11613000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr6:11611200-11613000	Weak transcription	Spleen	Spleen
19	chr6:11611200-11613000	Weak transcription	NHLF	lung
20	chr6:11611200-11613200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr6:11611200-11613200	Weak transcription	NH-A	brain
22	chr6:11611200-11613200	Weak transcription	NHDF-Ad	bronchial
23	chr6:11611200-11613600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr6:11611200-11614400	Weak transcription	Placenta	Placenta
25	chr6:11611200-11614800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr6:11611200-11615400	Weak transcription	Lung	lung
27	chr6:11611200-11616400	Weak transcription	Left Ventricle	heart
28	chr6:11611200-11616400	Weak transcription	Ovary	ovary
29	chr6:11611200-11616400	Weak transcription	Psoas Muscle	Psoas
30	chr6:11611200-11622600	Weak transcription	Fetal Muscle Leg	muscle
31	chr6:11611400-11612400	Weak transcription	HSMM	muscle
32	chr6:11611400-11612800	Weak transcription	HSMMtube	muscle
33	chr6:11611400-11613800	Weak transcription	Adipose Nuclei	Adipose
34	chr6:11611600-11612600	Weak transcription	Muscle Satellite Cultured Cells	--

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