Variant report

Variant	rs571416
Chromosome Location	chr6:11610956-11610957
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11603395..11605168-chr6:11610638..11612350,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs481333	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs505571	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs563605	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11606000-11612600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr6:11606400-11611200	Enhancers	NHDF-Ad	bronchial
3	chr6:11606600-11611200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:11607600-11615200	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr6:11608200-11611000	Weak transcription	Adipose Nuclei	Adipose
6	chr6:11608200-11613600	Weak transcription	Rectal Smooth Muscle	rectum
7	chr6:11608200-11615600	Weak transcription	Colon Smooth Muscle	Colon
8	chr6:11608800-11611000	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr6:11608800-11611200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:11608800-11611200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr6:11608800-11611200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:11608800-11611200	Enhancers	NHLF	lung
13	chr6:11608800-11614200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr6:11609000-11611200	Enhancers	Aorta	Aorta
15	chr6:11609000-11611200	Enhancers	Lung	lung
16	chr6:11609000-11612200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr6:11609400-11611000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr6:11609400-11611200	Enhancers	Fetal Muscle Leg	muscle
19	chr6:11609600-11611000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr6:11609600-11611200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:11609600-11611400	Enhancers	HSMM	muscle
22	chr6:11609600-11611400	Enhancers	HSMMtube	muscle
23	chr6:11609600-11611600	Enhancers	Muscle Satellite Cultured Cells	--
24	chr6:11609800-11611000	Weak transcription	Fetal Kidney	kidney
25	chr6:11610000-11611200	Enhancers	Spleen	Spleen
26	chr6:11610000-11613800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr6:11610200-11611000	Weak transcription	Left Ventricle	heart
28	chr6:11610200-11611200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr6:11610200-11611200	Enhancers	NH-A	brain
30	chr6:11610200-11613600	Enhancers	HUVEC	blood vessel
31	chr6:11610200-11613800	Weak transcription	Stomach Smooth Muscle	stomach
32	chr6:11610200-11631400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr6:11610600-11611000	Weak transcription	Placenta	Placenta
34	chr6:11610600-11611000	Weak transcription	Ovary	ovary
35	chr6:11610600-11613200	Weak transcription	Osteobl	bone
36	chr6:11610600-11615600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr6:11610800-11613200	Weak transcription	Hela-S3	cervix
38	chr6:11610800-11613400	Weak transcription	A549	lung

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