Variant report

Variant	rs4813485
Chromosome Location	chr20:23228346-23228347
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:23226825..23230641-chr20:23238537..23241083,3	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1338944	0.86[CHB][hapmap];0.80[ASN][1000 genomes]
rs1416399	0.81[ASN][1000 genomes]
rs1572707	0.81[ASN][1000 genomes]
rs4813486	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6048615	0.83[CHB][hapmap]
rs6076041	0.83[CHB][hapmap];0.80[ASN][1000 genomes]
rs844937	0.82[CHB][hapmap]
rs867909	0.83[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912817	chr20:23127661-23240969	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1066734	chr20:23170094-23277628	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23214200-23241000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:23225000-23229400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr20:23225400-23229400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr20:23225400-23229400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr20:23225600-23235600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr20:23225800-23228800	Enhancers	Spleen	Spleen
7	chr20:23226000-23229200	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr20:23226200-23229400	Enhancers	GM12878-XiMat	blood
9	chr20:23226400-23228600	Enhancers	Lung	lung
10	chr20:23226400-23234200	Weak transcription	Fetal Kidney	kidney
11	chr20:23226600-23228600	Weak transcription	Esophagus	oesophagus
12	chr20:23226600-23228600	Enhancers	Fetal Muscle Leg	muscle
13	chr20:23226600-23229200	Enhancers	Fetal Muscle Trunk	muscle
14	chr20:23226800-23228800	Enhancers	Adipose Nuclei	Adipose
15	chr20:23226800-23229200	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr20:23226800-23233000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr20:23226800-23237000	Weak transcription	Gastric	stomach
18	chr20:23227000-23232000	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr20:23227400-23228600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr20:23227400-23228600	Enhancers	Placenta	Placenta
21	chr20:23227400-23228600	Enhancers	Rectal Mucosa Donor 29	rectum
22	chr20:23227400-23228800	Enhancers	Duodenum Mucosa	Duodenum
23	chr20:23227400-23228800	Enhancers	Left Ventricle	heart
24	chr20:23227400-23228800	Enhancers	Ovary	ovary
25	chr20:23227600-23228400	Enhancers	HUVEC	blood vessel
26	chr20:23228000-23228600	Enhancers	Psoas Muscle	Psoas
27	chr20:23228200-23228400	Enhancers	Right Atrium	heart

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