Variant report

Variant	rs4814419
Chromosome Location	chr20:15937424-15937425
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1012300	0.91[CEU][hapmap];0.89[EUR][1000 genomes]
rs1033595	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1033596	0.83[CHB][hapmap];0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11697488	0.95[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.86[TSI][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2050747	0.83[CHB][hapmap];0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2236008	0.86[CEU][hapmap];0.83[CHD][hapmap];0.83[TSI][hapmap]
rs3859629	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.96[TSI][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4813202	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4813203	1.00[CHB][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];0.86[JPT][hapmap];0.82[MEX][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4814416	0.84[CEU][hapmap];0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4814417	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4814420	0.82[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6043612	0.86[CEU][hapmap]
rs6043626	0.86[CEU][hapmap];0.82[CHB][hapmap];0.88[CHD][hapmap];0.83[TSI][hapmap]
rs6043629	0.91[CHB][hapmap];0.88[CHD][hapmap];0.98[GIH][hapmap];0.95[MEX][hapmap];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6074969	0.83[CHB][hapmap];0.83[CHD][hapmap];0.98[GIH][hapmap];0.95[MEX][hapmap];0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6080026	0.86[CEU][hapmap];0.82[CHB][hapmap];0.88[CHD][hapmap];0.82[TSI][hapmap]
rs6080038	0.83[CHB][hapmap];0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6110827	0.81[CEU][hapmap];0.82[CHB][hapmap]
rs6135615	0.86[ASN][1000 genomes]
rs8117004	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.96[TSI][hapmap];0.83[YRI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833929	chr20:15765372-15977337	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3447866	chr20:15799286-16115291	Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15923000-15951200	Weak transcription	Primary B cells from peripheral blood	blood
2	chr20:15924200-15938400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr20:15937200-15940600	Weak transcription	Primary B cells from cord blood	blood

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