Variant report

Variant	rs6080038
Chromosome Location	chr20:15923008-15923009
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1033595	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1033596	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11697488	0.83[CHB][hapmap];0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2050747	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3859629	0.83[CHB][hapmap];0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4813203	0.83[CHB][hapmap]
rs4814416	1.00[CEU][hapmap];0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4814417	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4814419	0.83[CHB][hapmap];0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4814420	0.83[CHB][hapmap];0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6043626	0.82[CHB][hapmap]
rs6043629	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6074969	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6080026	0.82[CHB][hapmap]
rs6135615	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8117004	0.91[CHB][hapmap];0.83[JPT][hapmap];0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833929	chr20:15765372-15977337	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3447866	chr20:15799286-16115291	Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15912000-15930200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr20:15921400-15928000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr20:15922400-15924200	Enhancers	Hela-S3	cervix
4	chr20:15922600-15923200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr20:15922600-15923600	Weak transcription	Primary B cells from cord blood	blood
6	chr20:15922800-15923200	Enhancers	HMEC	breast
7	chr20:15923000-15923600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr20:15923000-15924000	Weak transcription	Aorta	Aorta
9	chr20:15923000-15924200	Enhancers	HSMM	muscle
10	chr20:15923000-15951200	Weak transcription	Primary B cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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