Variant report

Variant	rs4815115
Chromosome Location	chr20:22491456-22491457
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs6036134	0.84[ASN][1000 genomes]
rs6048146	0.84[ASN][1000 genomes]
rs6048147	0.84[ASN][1000 genomes]
rs6048148	0.84[ASN][1000 genomes]
rs6048155	0.84[ASN][1000 genomes]
rs6082725	0.95[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs8117447	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066578	chr20:22472671-22513844	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22484600-22492000	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr20:22489200-22492200	Enhancers	HepG2	liver
3	chr20:22489400-22492000	Weak transcription	Liver	Liver
4	chr20:22489600-22492200	Weak transcription	Fetal Intestine Small	intestine
5	chr20:22490000-22496000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr20:22490200-22492600	Weak transcription	Pancreas	Pancrea
7	chr20:22491200-22492400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr20:22491400-22491800	Weak transcription	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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